EY675856

Overview
NameEY675856
Unique NameEY675856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675856 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.630e-31
Identity = 66/109 (60.55%), Postives = 84/109 (77.06%), Query Frame = 2
Query:  155 GAKSGAALVKVAKLVDCYLAEAAMDSNLSLSEFVALAGALPSHARATDDGLYRAIDTYLKAHPEVTKQERKSLCRLIDSRKLSPEASLHAAQNDRLPVRAVIQVLFSEQ 481
            G  +  A ++VA+LVD YL E A D NL L++F  LA ALP  AR  DDGLYRAID+YLKAHP +++ ERK LCR++D +KLS +A +HAAQN+RLP+R V+QVLFSEQ
Sbjct:  494 GGNNQNAKMRVARLVDSYLTEVARDRNLPLTKFQVLAEALPESARTCDDGLYRAIDSYLKAHPTLSEHERKRLCRVMDCQKLSMDACMHAAQNERLPLRVVVQVLFSEQ 602          
BLAST of EY675856 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.519e-30
Identity = 63/103 (61.17%), Postives = 84/103 (81.55%), Query Frame = 2
Query:  173 ALVKVAKLVDCYLAEAAMDSNLSLSEFVALAGALPSHARATDDGLYRAIDTYLKAHPEVTKQERKSLCRLIDSRKLSPEASLHAAQNDRLPVRAVIQVLFSEQ 481
            A  +VA+L+D YL+E + D NLSL++F  LA +LP  ARA DDGLYRA+D+YLKAHP +T+ ERK LCR++D +KLS +A +HAAQN+RLP+R V+QVLF+EQ
Sbjct:  503 AKARVARLLDSYLSEVSRDRNLSLTKFQVLAESLPESARACDDGLYRAVDSYLKAHPTLTEHERKRLCRVMDCQKLSFDACMHAAQNERLPLRVVVQVLFTEQ 605          
BLAST of EY675856 vs. ExPASy Swiss-Prot
Match: Y5880_ARATH (BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.785e-29
Identity = 66/117 (56.41%), Postives = 86/117 (73.50%), Query Frame = 2
Query:  131 SLFT*DIEGAKSGAALVKVAKLVDCYLAEAAMDSNLSLSEFVALAGALPSHARATDDGLYRAIDTYLKAHPEVTKQERKSLCRLIDSRKLSPEASLHAAQNDRLPVRAVIQVLFSEQ 481
            S+F  D   + S  A+ KVAKLVD YLAE A D+NL LS+F+ +A ALP HAR   DGLYRAID YLKAH  ++  ++K L +LID +KLS EA  HAAQN+RLP+++++QVL+ EQ
Sbjct:  366 SVFECDSPHSPSQTAMFKVAKLVDSYLAEIAPDANLDLSKFLLIAEALPPHARTLHDGLYRAIDLYLKAHQGLSDSDKKKLSKLIDFQKLSQEAGAHAAQNERLPLQSIVQVLYFEQ 482          
BLAST of EY675856 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.805e-28
Identity = 64/111 (57.66%), Postives = 81/111 (72.97%), Query Frame = 2
Query:  149 IEGAKSGAALVKVAKLVDCYLAEAAMDSNLSLSEFVALAGALPSHARATDDGLYRAIDTYLKAHPEVTKQERKSLCRLIDSRKLSPEASLHAAQNDRLPVRAVIQVLFSEQ 481
            I   +S   +  VAKL+D YLAE A D NL L +F ALA ++P +AR  DDGLYRAID YLK HP + + ER++LCRL+D +KLS EA  HAAQN+RLP+R ++QVLF EQ
Sbjct:  396 IGSPQSITPMTAVAKLIDGYLAEVAPDVNLKLPKFQALAASIPEYARLLDDGLYRAIDIYLKHHPWLAETERENLCRLLDCQKLSLEACTHAAQNERLPLRIIVQVLFFEQ 506          
BLAST of EY675856 vs. ExPASy Swiss-Prot
Match: RPT2_ARATH (Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.253e-21
Identity = 53/112 (47.32%), Postives = 73/112 (65.18%), Query Frame = 2
Query:  146 DIEGAKSGAALVKVAKLVDCYLAEAAMDSNLSLSEFVALAGALPSHARATDDGLYRAIDTYLKAHPEVTKQERKSLCRLIDSRKLSPEASLHAAQNDRLPVRAVIQVLFSEQ 481
            D        +L +VAK VD YLAE A   +L++S+F A+A  +P  AR +DD LYRAID +LKAHP + + ER+ +C  +D  KLS +A LHA+QN RLPV  V+  L+ +Q
Sbjct:  356 DFNRGVCSVSLQRVAKTVDSYLAEIATYGDLTISKFNAIANLVPKSARKSDDDLYRAIDIFLKAHPNLDEIEREKVCSSMDPLKLSYDARLHASQNKRLPVNIVLHALYYDQ 467          
The following BLAST results are available for this feature:
BLAST of EY675856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RPT3_ARATH6.630e-3160.55Root phototropism protein 3 OS=Arabidopsis thalian... [more]
NPH3_ORYSJ2.519e-3061.17Coleoptile phototropism protein 1 OS=Oryza sativa ... [more]
Y5880_ARATH2.785e-2956.41BTB/POZ domain-containing protein At5g48800 OS=Ara... [more]
Y1044_ARATH1.805e-2857.66BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
RPT2_ARATH1.253e-2147.32Root phototropism protein 2 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-015-H08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675856 ID=EY675856; Name=EY675856; organism=Citrus sinensis; type=EST; length=769bp
GGGGAACCGGGGTCCCGGAAATTCCCGGGGGNTCGAACCCACCCGNTCCG
NNTGGATACCTTCGNTTTACCTCACACTTTGATGGCACTGTTTGCTTGAT
GTTGAAGCTTGTGTCTCCCGCTTGTGAAGAAGTTTGTTCACTTAGGATAT
TGAAGGTGCTAAGAGTGGTGCTGCTTTGGTTAAGGTTGCTAAGCTTGTTG
ATTGTTACTTAGCTGAAGCTGCCATGGATTCTAATTTGAGCTTGTCGGAG
TTTGTTGCTCTTGCTGGTGCTCTCCCTAGCCATGCTCGCGCCACTGATGA
TGGATTGTACCGTGCCATTGACACTTATCTCAAAGCACATCCCGAGGTAA
CAAAGCAAGAGAGAAAGAGTCTTTGCAGATTAATCGATAGCCGAAAGCTC
TCGCCAGAAGCATCACTGCATGCTGCACAAAACGACCGTTTACCCGTTAG
AGCTGTGATTCAGGTGCTCTTCTCCGAACAAAAGGGCTGANCNAACNCTC
GACTGGANTGGTCGTTCNCCGGCTCNGAGGCCCTGCGTGGGCTTGATCCC
TCGGCGGTCGTTGCTGTCCCGCTGGGTGTGGTGCTCCCTCTGGGGTTGGG
AACTGAGAGAGAATTCGTAAGTTCCAACCATGGCACCCTTGAAAGACAAT
TAAAAGTGGTGGAAAAAAAAGGACTATTTAATGGACAACTGGAGAAATCT
CATACCATAGTCAATTAATTGAGACAAATGGAGAGAAGTTGAAGAAATAG
TTGGATGAAGTCGAATGTA
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