EY675760

Overview
NameEY675760
Unique NameEY675760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length963
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675760 vs. ExPASy Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.176e-49
Identity = 102/116 (87.93%), Postives = 107/116 (92.24%), Query Frame = 3
Query:  249 NKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGNIAGSGGDPSTFHKSLINK 596
            NKDKDKDKK+PISRS+RAGIQFPVGRIHR LK+R++AHGRVGATAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG IAG G  P   HKSLINK
Sbjct:   18 NKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPH-IHKSLINK 132          
BLAST of EY675760 vs. ExPASy Swiss-Prot
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 2.075e-46
Identity = 99/115 (86.09%), Postives = 104/115 (90.43%), Query Frame = 3
Query:  255 DKDKDKKR-PISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGNIAGSGGDPSTFHKSLINK 596
            DKDKDKK+ P+SRSSRAG+QFPVGRIHR LKSR +AHGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG IAG G  P   HKSLINK
Sbjct:   21 DKDKDKKKAPVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPH-IHKSLINK 134          
BLAST of EY675760 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.710e-46
Identity = 96/115 (83.48%), Postives = 104/115 (90.43%), Query Frame = 3
Query:  255 DKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGNIAGSGGDPSTFHKSLINKN 599
            DKDKDKK+PI+RSSRAG+QFPVGR+HR LK+R  AHGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKG IAG G  P   HKSLINK+
Sbjct:   18 DKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVIPH-IHKSLINKS 131          
BLAST of EY675760 vs. ExPASy Swiss-Prot
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.345e-45
Identity = 97/115 (84.35%), Postives = 104/115 (90.43%), Query Frame = 3
Query:  255 DKDKDKKR-PISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGNIAGSGGDPSTFHKSLINK 596
            DKDKD+K+ P+SRSSRAGIQFPVGRIHR LK R++A+GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG IAG G  P   HKSLINK
Sbjct:   22 DKDKDRKKAPVSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPH-IHKSLINK 135          
BLAST of EY675760 vs. ExPASy Swiss-Prot
Match: H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana GN=At2g38810 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.294e-45
Identity = 96/114 (84.21%), Postives = 101/114 (88.60%), Query Frame = 3
Query:  255 DKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGNIAGSGGDPSTFHKSLINK 596
            +KD  KK+ ISRSSRAGIQFPVGRIHR LK R++AHGRVGATAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG IAG G  P   HKSL+NK
Sbjct:   20 NKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPH-IHKSLVNK 132          
BLAST of EY675760 vs. ExPASy Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 8.719e-45
Identity = 95/115 (82.61%), Postives = 101/115 (87.83%), Query Frame = 3
Query:  255 DKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGNIAGSGGDPSTFHKSLINKN 599
            +KDK KK P+SRSSRAG+QFPVGRIHR LK R  A+GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG IAG G  P   HKSLINK+
Sbjct:   21 EKDKGKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPH-IHKSLINKS 134          
BLAST of EY675760 vs. ExPASy Swiss-Prot
Match: H2AZ_CHICK (Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 4.784e-43
Identity = 92/119 (77.31%), Postives = 99/119 (83.19%), Query Frame = 3
Query:  252 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGNIAGSGGDPSTFHKSLINKNYQK 608
            KD  K K + +SRS RAG+QFPVGRIHRHLKSR  +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK  IAG G  P   HKSLI K  Q+
Sbjct:    8 KDSGKTKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPH-IHKSLIGKKGQQ 125          
BLAST of EY675760 vs. ExPASy Swiss-Prot
Match: H2AV_RABIT (Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE=2 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 4.784e-43
Identity = 91/122 (74.59%), Postives = 101/122 (82.79%), Query Frame = 3
Query:  252 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGNIAGSGGDPSTFHKSLINKNYQKMSS 617
            KD  K K + +SRS RAG+QFPVGRIHRHLK+R  +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK  IAG G  P   HKSLI K  Q+ ++
Sbjct:    8 KDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGAIPH-IHKSLIGKKGQQKTA 128          
BLAST of EY675760 vs. ExPASy Swiss-Prot
Match: H2AZ_SHEEP (Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 6.248e-43
Identity = 92/119 (77.31%), Postives = 99/119 (83.19%), Query Frame = 3
Query:  252 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGNIAGSGGDPSTFHKSLINKNYQK 608
            KD  K K + +SRS RAG+QFPVGRIHRHLKSR  +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK  IAG G  P   HKSLI K  Q+
Sbjct:    8 KDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPH-IHKSLIGKKGQQ 125          
BLAST of EY675760 vs. ExPASy Swiss-Prot
Match: H2AZ_RAT (Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 6.248e-43
Identity = 92/119 (77.31%), Postives = 99/119 (83.19%), Query Frame = 3
Query:  252 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGNIAGSGGDPSTFHKSLINKNYQK 608
            KD  K K + +SRS RAG+QFPVGRIHRHLKSR  +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK  IAG G  P   HKSLI K  Q+
Sbjct:    8 KDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPH-IHKSLIGKKGQQ 125          
The following BLAST results are available for this feature:
BLAST of EY675760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
H2AV1_ARATH1.176e-4987.93Histone H2A variant 1 OS=Arabidopsis thaliana GN=H... [more]
H2AV1_ORYSJ2.075e-4686.09Probable histone H2A variant 1 OS=Oryza sativa sub... [more]
H2AV3_ARATH2.710e-4683.48Probable histone H2A variant 3 OS=Arabidopsis thal... [more]
H2AV2_ORYSJ1.345e-4584.35Probable histone H2A variant 2 OS=Oryza sativa sub... [more]
H2AV2_ARATH2.294e-4584.21Probable histone H2A variant 2 OS=Arabidopsis thal... [more]
H2AV3_ORYSJ8.719e-4582.61Probable histone H2A variant 3 OS=Oryza sativa sub... [more]
H2AZ_CHICK4.784e-4377.31Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3[more]
H2AV_RABIT4.784e-4374.59Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE... [more]
H2AZ_SHEEP6.248e-4377.31Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3[more]
H2AZ_RAT6.248e-4377.31Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-014-G08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675760 ID=EY675760; Name=EY675760; organism=Citrus sinensis; type=EST; length=963bp
CCACGCGTCCGAATTTTTTTTTGTTGGACACCAATTTTTACCGGATCTGG
GTTTCTTTCCAGTTAATTTTGTTTATTTATTTTTATTTTGTTGCATATCA
TGGTTTTCTTCCTTTTATTAAGCGTTGTTTTTAATTTTTTTTAAGAAATA
TGTTTTGTGAAATAAAATTTTGTGTTGAAAATTTGAGCAGGTGAGACATG
GCGGGAAAAGGAGGGAAGGGTCTTTTAGCGGCGAAAACCACGGCTGGTAA
CAAGGATAAGGACAAGGATAAGAAAAGGCCAATTTCCAGGTCATCTCGTG
CCGGTATCCAGTTTCCTGTGGGTCGCATTCACCGCCACCTCAAGTCAAGG
ATTGCTGCCCATGGACGTGTTGGGGCCACTGCTGCTGTTTATTTGGCTTC
AATCCTTGAATACCTGACTGCTGAGGTTCTTGAGCTGGCTGGGAATGCAA
GCAAGGATCTGAAGGTGAAGAGAATTACGCCAAGGCATCTGCAGCTTGCT
ATTAGAGGAGATGAAGAACTGGACACTCTCATCAAGGGGAACATTGCTGG
AAGTGGGGGTGATCCCTCCACATTTCACAAATCACTTATCAACAAAAACT
ACCAAAAAATGAGTTCTTTTGCGTGGTTTTAAATCCCCCCCCTAATGATG
ACCTTTGGTTTTTAGGGGTAACGGTTTTTCCATTTAGGGGGAAACCTTTG
GAACCTTTTTTGGGTTTTTTTAGAAGGGGTGTCCAAAAAAAAACCTGGGT
TTATGAAAATATGGGGTTGGACCCCTTAGGGGTTTTGTCCCCCGGGGAAT
CTAAAAAAACCCCCGGGGTTGGGGGGAGAAGAAAAAGGGTGTTGTTCCTT
TTTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGGGGGGGGGGGCCCCCCCCCCCCTAAAAGAA
AAAAATTCCAAAA
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