EY675707

Overview
NameEY675707
Unique NameEY675707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675707 vs. ExPASy Swiss-Prot
Match: CF106_DANRE (Uncharacterized protein C6orf106 homolog OS=Danio rerio GN=zgc:101577 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.674e-14
Identity = 37/117 (31.62%), Postives = 63/117 (53.85%), Query Frame = 1
Query:  175 PGCSRLDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDRFSDGVSVEIEVPADGVPVEGEIDIAVDFTASELPGRYISYWRMSSPSRVKFGQRVWVLIQVD 525
            P  +     F+ DV + +G  + P TPFTK WR++NTG  +WP G  L ++GGD+F     V +      +  +   D++V   +  +PG Y   WRM + + + +G  +WV++ V+
Sbjct:   68 PNINTPSMSFVEDVTIGEGESVPPDTPFTKTWRIQNTGTESWPPGVCLKYVGGDQFGHVNMVMVR----SLDPQEISDVSVQMRSPAVPGMYQGQWRMCTATGLFYGDVIWVILSVE 180          
BLAST of EY675707 vs. ExPASy Swiss-Prot
Match: NBR1_PONAB (Next to BRCA1 gene 1 protein OS=Pongo abelii GN=NBR1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.066e-12
Identity = 42/112 (37.50%), Postives = 62/112 (55.36%), Query Frame = 1
Query:  196 SCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGD-RFSDGVSVEIEVPADGVPVEGEIDIAVDFTASELPGRYISYWRMSSPSRVKFGQRVWVLIQVDP 528
            S   +D N+ DGT + P T F K WRM+NTGN+ W   ++L ++ G+   +     ++ VP       G   ++V+F A  L G Y S+WR+S   + +FG RVW  I VDP
Sbjct:  302 SAAFVDENLPDGTHLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGNLTLASTEKKDVLVPCLKAGHVGV--VSVEFIAPALEGTYTSHWRLSHKGQ-QFGPRVWCSIIVDP 410          
BLAST of EY675707 vs. ExPASy Swiss-Prot
Match: NBR1_HUMAN (Next to BRCA1 gene 1 protein OS=Homo sapiens GN=NBR1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 4.066e-12
Identity = 42/112 (37.50%), Postives = 62/112 (55.36%), Query Frame = 1
Query:  196 SCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGD-RFSDGVSVEIEVPADGVPVEGEIDIAVDFTASELPGRYISYWRMSSPSRVKFGQRVWVLIQVDP 528
            S   +D N+ DGT + P T F K WRM+NTGN+ W   ++L ++ G+   +     ++ VP       G   ++V+F A  L G Y S+WR+S   + +FG RVW  I VDP
Sbjct:  372 SAAFVDENLPDGTHLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGNLTLASTEKKDVLVPCLKAGHVGV--VSVEFIAPALEGTYTSHWRLSHKGQ-QFGPRVWCSIIVDP 480          
BLAST of EY675707 vs. ExPASy Swiss-Prot
Match: NBR1_MOUSE (Next to BRCA1 gene 1 protein OS=Mus musculus GN=Nbr1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.311e-12
Identity = 42/112 (37.50%), Postives = 62/112 (55.36%), Query Frame = 1
Query:  196 SCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGD-RFSDGVSVEIEVPADGVPVEGEIDIAVDFTASELPGRYISYWRMSSPSRVKFGQRVWVLIQVDP 528
            S   +D N+ DGT + P T F K WRM+NTGN+ W   ++L ++ G+   +     ++ VP       G   ++V+F A  L G Y S+WR+S   + +FG RVW  I VDP
Sbjct:  373 SAAFVDENLPDGTHLQPGTKFIKHWRMKNTGNVKWNTDTKLKFMWGNLTLASTEKKDVLVPCLKAGHVGV--VSVEFIAPTLEGTYTSHWRLSHKGQ-QFGPRVWCSIIVDP 481          
BLAST of EY675707 vs. ExPASy Swiss-Prot
Match: CF106_CHICK (Uncharacterized protein C6orf106 homolog OS=Gallus gallus GN=RCJMB04_11e11 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.311e-12
Identity = 34/108 (31.48%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  202 FILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDRFSDGVSVEIEVPADGVPVEGEIDIAVDFTASELPGRYISYWRMSSPSRVKFGQRVWVLIQVD 525
            F+ DV + +G  + P T FTK WR++NTG   WP G  L ++GGD+F     V +      +  +   D++V   +    G Y   WRM + + + +G  +WV++ V+
Sbjct:   77 FVEDVTIGEGESIPPDTQFTKTWRIQNTGTEVWPPGVCLKYVGGDQFGHVNMVMVR----SLEPQEIADVSVQMCSPSTAGMYQGQWRMCTATGLYYGDVIWVILSVE 180          
BLAST of EY675707 vs. ExPASy Swiss-Prot
Match: NBR1_RAT (Next to BRCA1 gene 1 protein OS=Rattus norvegicus GN=Nbr1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.636e-11
Identity = 41/112 (36.61%), Postives = 61/112 (54.46%), Query Frame = 1
Query:  196 SCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGD-RFSDGVSVEIEVPADGVPVEGEIDIAVDFTASELPGRYISYWRMSSPSRVKFGQRVWVLIQVDP 528
            S   +D N+ DGT + P T F K WRM+NTGN+ W   ++L ++ G+   +     ++ VP       G   ++V+F A  L G Y  +WR+S   + +FG RVW  I VDP
Sbjct:  374 SAAFVDENLPDGTHLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGNLTLASTEKKDVLVPCLKAGHIGV--VSVEFIAPTLEGTYTLHWRLSHKGQ-QFGPRVWCSIIVDP 482          
BLAST of EY675707 vs. ExPASy Swiss-Prot
Match: CF106_HUMAN (Uncharacterized protein C6orf106 OS=Homo sapiens GN=C6orf106 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.636e-11
Identity = 35/117 (29.91%), Postives = 59/117 (50.43%), Query Frame = 1
Query:  175 PGCSRLDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDRFSDGVSVEIEVPADGVPVEGEIDIAVDFTASELPGRYISYWRMSSPSRVKFGQRVWVLIQVD 525
            P  S     F+ DV + +G  + P T F K WR++N+G  AWP G  L ++GGD+F     V +      +  +   D++V   +    G Y   WRM + + + +G  +WV++ V+
Sbjct:   68 PNISVPSMSFVEDVTIGEGESIPPDTQFVKTWRIQNSGAEAWPPGVCLKYVGGDQFGHVNMVMVR----SLEPQEIADVSVQMCSPSRAGMYQGQWRMCTATGLYYGDVIWVILSVE 180          
The following BLAST results are available for this feature:
BLAST of EY675707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CF106_DANRE5.674e-1431.62Uncharacterized protein C6orf106 homolog OS=Danio ... [more]
NBR1_PONAB4.066e-1237.50Next to BRCA1 gene 1 protein OS=Pongo abelii GN=NB... [more]
NBR1_HUMAN4.066e-1237.50Next to BRCA1 gene 1 protein OS=Homo sapiens GN=NB... [more]
NBR1_MOUSE5.311e-1237.50Next to BRCA1 gene 1 protein OS=Mus musculus GN=Nb... [more]
CF106_CHICK5.311e-1231.48Uncharacterized protein C6orf106 homolog OS=Gallus... [more]
NBR1_RAT2.636e-1136.61Next to BRCA1 gene 1 protein OS=Rattus norvegicus ... [more]
CF106_HUMAN2.636e-1129.91Uncharacterized protein C6orf106 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-014-B08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675707 ID=EY675707; Name=EY675707; organism=Citrus sinensis; type=EST; length=919bp
CCACGCGTCCGCCCACGCGTCCGAATCGCTAGGCCGGTTCATTATCGACA
TCCACGACCTTTCAGAGGGTTATATGATCATAGACAGAACTTTTGGCTGG
GAACCCCAGGCCCAGATACACAACATGTTGGTGCACTAGGAGCTCCACAC
ATTTTGAGAGATCGTGGAATCAAGCCTGGTTGTTCTAGGTTAGACAGTTG
CTTTATTTTGGATGTTAATGTATTGGATGGGACTATGATGGCTCCATCTA
CCCCATTTACAAAGATATGGAGGATGCGCAATACTGGTAATTTGGCTTGG
CCTAGGGGTTCTCAACTTGTGTGGATTGGGGGCGATAGGTTTAGTGATGG
AGTTTCAGTTGAGATAGAGGTTCCTGCTGATGGTGTGCCGGTGGAGGGGG
AGATTGACATTGCAGTTGATTTTACTGCTTCTGAATTGCCTGGTCGTTAT
ATCTCTTATTGGAGGATGTCCTCACCATCAAGGGTCAAATTTGGGCAACG
TGTATGGGTTCTTATACAGGTCGATCCCTCTCTGAAGGACAGCATTATTG
ATGGCTTTGGAGGCTTGAACTTGAATGTTCCCCCTGAAAACACAAGGTCT
AATGGTGGTGAAATTTATGGATGGGAATGGTTCGGCCTATTGGGGGAGGG
AGGTTTTCGGGAAGCTAACAACCCCCTTCCGTGGGGAAGGAACCCCCCAA
AACCCTGGGTTTAAAAACCCCTAAAAAGGGAAAGGGAAAAAAAAGGGTTC
CCCCAAAAAGAAAAACTTTGGCGGGGGGGGGGAAAGGGGGGGGGCTTTCA
CCTTTTGCGCCCCCCCCCACCCCCCCCCCCCCCCCCCTTTCTAAAAAGGG
ACATTTCAAACCGCGTGTTTTTTTTTCCCCCCTTTTTTTTTAACGCGGGG
GCGGAAAAAAACAAAAACA
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