EY675683

Overview
NameEY675683
Unique NameEY675683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length968
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675683 vs. ExPASy Swiss-Prot
Match: Y2135_PSEFS (UPF0502 protein PFLU_2135 OS=Pseudomonas fluorescens (strain SBW25) GN=PFLU_2135 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.248e-31
Identity = 68/87 (78.16%), Postives = 73/87 (83.91%), Query Frame = 1
Query:  343 MTTEHDTTSEEPRLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTTREPVMNLSQGQVGQSLPALKGPGVTPAGMGHPPQR 603
            MT EHDT + EPRLNSTEIRILGCLIEKQAT+PETYPLTLNALV+ACNQKT+REPVMNLSQGQVGQSL  L+G G T   MG    R
Sbjct:    1 MTAEHDTDTPEPRLNSTEIRILGCLIEKQATNPETYPLTLNALVLACNQKTSREPVMNLSQGQVGQSLRVLEGQGFTRLVMGSRADR 87          
BLAST of EY675683 vs. ExPASy Swiss-Prot
Match: Y3711_PSEPF (UPF0502 protein Pfl01_3711 OS=Pseudomonas fluorescens (strain Pf0-1) GN=Pfl01_3711 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.155e-28
Identity = 65/87 (74.71%), Postives = 72/87 (82.76%), Query Frame = 1
Query:  343 MTTEHDTTSEEPRLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTTREPVMNLSQGQVGQSLPALKGPGVTPAGMGHPPQR 603
            MTTE +T S+EPRLN+TEIRILG LIEKQATSPETYPLTLNALV+ACNQKT+REPVMNL+QGQVGQSL AL+  G     MG    R
Sbjct:    1 MTTEFETRSDEPRLNATEIRILGSLIEKQATSPETYPLTLNALVLACNQKTSREPVMNLTQGQVGQSLRALESRGFAKLVMGSRADR 87          
BLAST of EY675683 vs. ExPASy Swiss-Prot
Match: Y4004_PSEF5 (UPF0502 protein PFL_4004 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=PFL_4004 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.179e-27
Identity = 64/87 (73.56%), Postives = 71/87 (81.61%), Query Frame = 1
Query:  343 MTTEHDTTSEEPRLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTTREPVMNLSQGQVGQSLPALKGPGVTPAGMGHPPQR 603
            M++EHDT  E  RL+ST+IRILG LIEKQATSPETYPLTLNALVIACNQKT+REPVMNL+QGQVGQSL AL+  G T   MG    R
Sbjct:    1 MSSEHDTPGEALRLSSTDIRILGSLIEKQATSPETYPLTLNALVIACNQKTSREPVMNLTQGQVGQSLRALEARGFTRLVMGSRADR 87          
BLAST of EY675683 vs. ExPASy Swiss-Prot
Match: Y2686_PSESM (UPF0502 protein PSPTO_2686 OS=Pseudomonas syringae pv. tomato GN=PSPTO_2686 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 9.154e-26
Identity = 59/79 (74.68%), Postives = 68/79 (86.08%), Query Frame = 1
Query:  367 SEEPRLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTTREPVMNLSQGQVGQSLPALKGPGVTPAGMGHPPQR 603
            +E  +LNSTE+RILGCLIEKQAT+PETYPLTLNALVIACNQKT+R+PVMNL+QGQVGQSL AL+G G+T   MG    R
Sbjct:   14 AEALQLNSTEVRILGCLIEKQATNPETYPLTLNALVIACNQKTSRDPVMNLTQGQVGQSLRALEGRGLTRLVMGSRADR 92          
BLAST of EY675683 vs. ExPASy Swiss-Prot
Match: Y2419_PSEU2 (UPF0502 protein Psyr_2419 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=Psyr_2419 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 9.154e-26
Identity = 59/86 (68.60%), Postives = 69/86 (80.23%), Query Frame = 1
Query:  346 TTEHDTTSEEPRLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTTREPVMNLSQGQVGQSLPALKGPGVTPAGMGHPPQR 603
            +TE    +E  +LN TE+RILGCLIEKQAT+PETYPLTLNALV ACNQKT+R+PVMNL+QGQVGQSL AL+G G+T   MG    R
Sbjct:    7 STESSPNTEALQLNGTEVRILGCLIEKQATNPETYPLTLNALVTACNQKTSRDPVMNLTQGQVGQSLRALEGRGLTRLVMGSRADR 92          
BLAST of EY675683 vs. ExPASy Swiss-Prot
Match: Y2442_PSEPK (UPF0502 protein PP_2442 OS=Pseudomonas putida (strain KT2440) GN=PP_2442 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.933e-25
Identity = 59/85 (69.41%), Postives = 69/85 (81.18%), Query Frame = 1
Query:  349 TEHDTTSEEPRLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTTREPVMNLSQGQVGQSLPALKGPGVTPAGMGHPPQR 603
            +EH+T  E  R NS EIR+LG LIEKQATSPE+YPLTLNALV+ACNQKT+REPVMNL+QGQVGQ+L AL+G G+T   MG    R
Sbjct:    2 SEHETAGEG-RFNSIEIRVLGSLIEKQATSPESYPLTLNALVLACNQKTSREPVMNLTQGQVGQALRALEGQGMTRLQMGSRADR 85          
BLAST of EY675683 vs. ExPASy Swiss-Prot
Match: Y3252_PSEP1 (UPF0502 protein Pput_3252 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=Pput_3252 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.255e-24
Identity = 57/85 (67.06%), Postives = 68/85 (80.00%), Query Frame = 1
Query:  349 TEHDTTSEEPRLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTTREPVMNLSQGQVGQSLPALKGPGVTPAGMGHPPQR 603
            +EH+T  E  R NS E+R+LG LIEKQATSPE+YPLTLNALV+ACNQKT+REPVMNL+QGQVGQ+L  L+G G+T   MG    R
Sbjct:    2 SEHETAGEG-RFNSIEVRVLGSLIEKQATSPESYPLTLNALVLACNQKTSREPVMNLTQGQVGQALRVLEGQGMTRLQMGSRADR 85          
BLAST of EY675683 vs. ExPASy Swiss-Prot
Match: Y3531_PSEPG (UPF0502 protein PputGB1_3531 OS=Pseudomonas putida (strain GB-1) GN=PputGB1_3531 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.846e-24
Identity = 58/85 (68.24%), Postives = 68/85 (80.00%), Query Frame = 1
Query:  349 TEHDTTSEEPRLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTTREPVMNLSQGQVGQSLPALKGPGVTPAGMGHPPQR 603
            +EH+T  E  R NS EIR+LG LIEKQATSPE+YPLTLNALV+ACNQKT+REPVMNL+QGQVGQ+L AL+G  +T   MG    R
Sbjct:    2 SEHETAGEG-RFNSIEIRVLGSLIEKQATSPESYPLTLNALVLACNQKTSREPVMNLTQGQVGQALRALEGQDLTRLQMGSRADR 85          
BLAST of EY675683 vs. ExPASy Swiss-Prot
Match: Y2577_PSE14 (UPF0502 protein PSPPH_2577 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=PSPPH_2577 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.568e-24
Identity = 54/86 (62.79%), Postives = 69/86 (80.23%), Query Frame = 1
Query:  346 TTEHDTTSEEPRLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTTREPVMNLSQGQVGQSLPALKGPGVTPAGMGHPPQR 603
            ++E    ++   LNS+E+R+LGCLIEKQAT+PETYPLTLNALV+ACNQKT+R+PVM+L+ GQVGQSL AL+G G+T   MG    R
Sbjct:    7 SSESSPNADALHLNSSEVRVLGCLIEKQATNPETYPLTLNALVLACNQKTSRDPVMSLTPGQVGQSLRALEGRGLTRLVMGSRADR 92          
BLAST of EY675683 vs. ExPASy Swiss-Prot
Match: Y3184_PSEPW (UPF0502 protein PputW619_3184 OS=Pseudomonas putida (strain W619) GN=PputW619_3184 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.119e-23
Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = 1
Query:  364 TSEEPRLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTTREPVMNLSQGQVGQSLPALKGPGVTPAGMGHPPQR 603
            T++E R +STEIRILG LIEKQATSPE+YPLTLNALV+ACNQKT+REPVMNL+QGQVGQ+L AL+   +T   MG    R
Sbjct:    6 TADEGRFSSTEIRILGALIEKQATSPESYPLTLNALVLACNQKTSREPVMNLTQGQVGQALRALESQDMTRLQMGSRADR 85          
The following BLAST results are available for this feature:
BLAST of EY675683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
Y2135_PSEFS3.248e-3178.16UPF0502 protein PFLU_2135 OS=Pseudomonas fluoresce... [more]
Y3711_PSEPF1.155e-2874.71UPF0502 protein Pfl01_3711 OS=Pseudomonas fluoresc... [more]
Y4004_PSEF52.179e-2773.56UPF0502 protein PFL_4004 OS=Pseudomonas fluorescen... [more]
Y2686_PSESM9.154e-2674.68UPF0502 protein PSPTO_2686 OS=Pseudomonas syringae... [more]
Y2419_PSEU29.154e-2668.60UPF0502 protein Psyr_2419 OS=Pseudomonas syringae ... [more]
Y2442_PSEPK5.933e-2569.41UPF0502 protein PP_2442 OS=Pseudomonas putida (str... [more]
Y3252_PSEP12.255e-2467.06UPF0502 protein Pput_3252 OS=Pseudomonas putida (s... [more]
Y3531_PSEPG3.846e-2468.24UPF0502 protein PputGB1_3531 OS=Pseudomonas putida... [more]
Y2577_PSE148.568e-2462.79UPF0502 protein PSPPH_2577 OS=Pseudomonas syringae... [more]
Y3184_PSEPW1.119e-2370.00UPF0502 protein PputW619_3184 OS=Pseudomonas putid... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-013-H03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675683 ID=EY675683; Name=EY675683; organism=Citrus sinensis; type=EST; length=968bp
ACCGGGCGGGTCACCGGTCGGGATTCCCGGGTCGACAGCGATCTGCACCT
GACGCACCAGCGCCCTCTTGAGCGGGTACAGGCGTGCTTGCAGGAAGGCG
TTCCCGTCGATGTTCTTGGCGGTGGCGTGGGCTTCGGCCTTGTTCAGCAC
ATCGCTCAGGGCGTTGAGCATTTGCTTCCAGACCGGGAGGGAAGCGGCGT
ACAGGGAAATAGTCATGACAGTCTCGACAGTTGTGGCAGGGTTTGAAACA
GCGGCGATTATAGACATGCCGGCCGCCAGCGCCGCTTGTCTTTTATTTTT
TCAGGATTAGGCTAGTGGGCTCACTGCATTAGGGAAAGCGCGATGACCAC
CGAGCACGACACCACTTCCGAAGAGCCGCGCCTGAACAGCACGGAAATCC
GCATCCTGGGCTGCCTGATCGAAAAGCAGGCTACCAGCCCTGAAACCTAC
CCGTTGACGCTCAACGCGCTGGTGATCGCCTGCAACCAGAAAACCACCCG
CGAACCGGTGATGAACCTCAGCCAGGGCCAGGTCGGGCAGAGCCTGCCGG
CCCTGAAAGGTCCCGGGGTTACCCCGGCGGGGATGGGGCACCCCCCCCAA
CGCCTGGGAACCTTCGGGGGGACAAGGCCCTTGGAACGGGGGGCCGGCCC
AGGGGAATTCTCAGGGGGGCTGTTTGTTCCTGGGGGGGGCCCCCAAAGGG
GTAAAAAAATACATGACCCCCCACCGGAACCCCTGCCCAAATTTTGAAAA
AAACCCGAAGAAAGTGGGGTGCTCCCAACTGGAAACACCCTAATTGGCCC
CTTGGGGGCGGGCTTTTTTTTGGGGGCCCCCTTCCACTCCGGGGCGAAAC
GGGGAAAAAATAACAGTACATAAACCACCCCCCCCTGGGGGGGAACCACA
CGGGGAGTTAATTATAAAACAGCCTCTCCTTGGGGCGGGAGCCCGGTGGG
GAAACCCCCCCGGGGAGG
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