EY675606

Overview
NameEY675606
Unique NameEY675606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675606 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.850e-23
Identity = 50/76 (65.79%), Postives = 67/76 (88.16%), Query Frame = 1
Query:  154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVCPAAQRMLIYQGKVLKDDTALEESKVAEKSFVVVRLSREE 381
            IFVKTLKGT F++EVKPED+V DVK  IE+VQG+DV PAA++MLI+QGKVLKD+T +EE+KVAE SF+V+ +++ +
Sbjct:    3 IFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSK 78          
BLAST of EY675606 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.280e-18
Identity = 46/74 (62.16%), Postives = 61/74 (82.43%), Query Frame = 1
Query:  154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVCPAAQRMLIYQGKVLKDDTALEESKVAEKSFVVVRLSR 375
            IFVKTL G++F++EVKP D V DVK  IETV+G++  PAA++MLI+QGKVLKD+T LEE+ V E SF+V+ LS+
Sbjct:    3 IFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAEY-PAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSK 75          
BLAST of EY675606 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.210e-16
Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 1
Query:  154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVCPAAQRMLIYQGKVLKDDTALEESKVAEKSFVVVRL 369
            I VKTLKG++F +EV     V DVK  IET QG  + PA Q+MLI+QGKVLKDDT L+E+KV E SF+V+ L
Sbjct:    3 ISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIML 74          
BLAST of EY675606 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 8.968e-15
Identity = 39/74 (52.70%), Postives = 53/74 (71.62%), Query Frame = 1
Query:  160 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVCPAAQRMLIYQGKVLKDDTALEESKVAEKSFVVVRLSREE 381
            VKTLKG+ F++ V P DT+  VK  IE  QG D  P  Q++LI+ GKVLKD+T+L E+KV E+ F+VV LS+ +
Sbjct:    5 VKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSK 78          
BLAST of EY675606 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.591e-14
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 1
Query:  160 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVCPAAQRMLIYQGKVLKDDTALEESKVAEKSFVVVRLSREE 381
            VKTLKG+ F++ V P DT+  VK  IE  Q  D  P  Q++LI+ GKVLKD+T L E+KV E+ F+VV LS+ +
Sbjct:    5 VKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSK 78          
BLAST of EY675606 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.393e-13
Identity = 35/74 (47.30%), Postives = 54/74 (72.97%), Query Frame = 1
Query:  154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVCPAAQRMLIYQGKVLKDDTALEESKVAEKSFVVVRLSR 375
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D  P A + LIY GK+L DDTAL+E K+ EK+FVVV +++
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTK 76          
BLAST of EY675606 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.393e-13
Identity = 35/74 (47.30%), Postives = 54/74 (72.97%), Query Frame = 1
Query:  154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVCPAAQRMLIYQGKVLKDDTALEESKVAEKSFVVVRLSR 375
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D  P A + LIY GK+L DDTAL+E K+ EK+FVVV +++
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTK 76          
BLAST of EY675606 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.393e-13
Identity = 35/74 (47.30%), Postives = 54/74 (72.97%), Query Frame = 1
Query:  154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVCPAAQRMLIYQGKVLKDDTALEESKVAEKSFVVVRLSR 375
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D  P A + LIY GK+L DDTAL+E K+ EK+FVVV +++
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76          
BLAST of EY675606 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.870e-12
Identity = 34/74 (45.95%), Postives = 54/74 (72.97%), Query Frame = 1
Query:  154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVCPAAQRMLIYQGKVLKDDTALEESKVAEKSFVVVRLSR 375
            + +KTL+  +F +++ P++TV  +K KIE+ +G D  P A + LIY GK+L DDTAL+E K+ EK+FVVV +++
Sbjct:    3 VTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76          
The following BLAST results are available for this feature:
BLAST of EY675606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
RD23C_ARATH6.850e-2365.79Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RD23D_ARATH2.280e-1862.16Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RAD23_ORYSJ6.210e-1659.72Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23A_ARATH8.968e-1552.70Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_ARATH7.591e-1451.35Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23B_RAT8.393e-1347.30UV excision repair protein RAD23 homolog B OS=Ratt... [more]
RD23B_MOUSE8.393e-1347.30UV excision repair protein RAD23 homolog B OS=Mus ... [more]
RD23B_HUMAN8.393e-1347.30UV excision repair protein RAD23 homolog B OS=Homo... [more]
RD23B_BOVIN1.870e-1245.95UV excision repair protein RAD23 homolog B OS=Bos ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-012-G12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675606 ID=EY675606; Name=EY675606; organism=Citrus sinensis; type=EST; length=787bp
TCTATATGCTTCTCCCCTTGTGCTTCGGTTTTCTCTCTCCGACTGTATCA
ATTCCAGATAGACATTGAAAAGACCTTGCGGATCGGAAAACCAAATAAAA
TAGTTGAATTCGAGAGACCCAACGGAACGTAGAAAAAGAAGAAGATGATG
AAGATTTTCGTTAAAACTCTCAAAGGAACTTCTTTCGACGTCGAAGTGAA
ACCTGAAGACACGGTCTTTGATGTGAAAATGAAGATAGAAACTGTTCAAG
GATCGGATGTTTGTCCTGCTGCGCAACGGATGCTGATTTATCAGGGGAAA
GTCCTCAAAGATGATACTGCGCTGGAGGAGAGCAAAGTAGCTGAAAAGAG
TTTTGTGGTTGTTAGGTTATCAAGGGAAGAAGAAACCGACTGGGTGAAAG
TCAACTAGGGGGGGGGGGGGGGAGGAGAGCTCCGACAATAGGGTGCGCAT
CCCGGGCAAAGGCCACGGATAAACTCCACGGAATGCGTAGCAGTGTCCAA
GGAGCCGGAAGGGCTCGGAACGAGCTACTAGAGCGGAGTGGAGACAAAAA
GTTGGGGACGAAATAAAGAGGAGGGAAGGGGGGAGGGAGAAGCAGAGGAA
GGGGGGGCGAACGGGGGGAGACGGCCGAAGAGGAGAATAGGGGAGGAGGA
CGGGAGCAGGGAGGAGGAATGGTGGCGAGGAACGGAAAGGGGCGTAGGCG
GGGAAGCGTAGGTCGAGTTCGGGGGGGGGATCCGGATAGGGAGTGGGAGA
TCGGGAGGCGCCGACGAGAGTGACGGACACCGGCCGG
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