EY675563

Overview
NameEY675563
Unique NameEY675563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1059
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675563 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 8.244e-23
Identity = 51/98 (52.04%), Postives = 61/98 (62.24%), Query Frame = 3
Query:   42 VCPEGECCSPFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGNGVNGADHLPT---RKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGN 326
            +CP G CCS +GWCG T DYC +GCQS C+    G      G  G G  G  +L       MF+D+L+YRND +CPA  FYTY+AFI AAK FP FGN
Sbjct:   32 LCPGGLCCSSYGWCGTTADYCGDGCQSQCDGGGGGGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGN 129          
BLAST of EY675563 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.077e-22
Identity = 54/102 (52.94%), Postives = 66/102 (64.71%), Query Frame = 3
Query:   42 VCPEGECCSPFGWCGLTTDYCCEGCQSNCNQVVCGE-----CDPDDGTAGNGVNG--ADHLPTRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGN 326
            +CP G CCS +GWCG T DYC  GCQS C+    G+     CD  D   G+G +G  +D +P  K F+ LL++RND RCPA  FYTY+AFI AAK FP FGN
Sbjct:   33 LCPGGLCCSSYGWCGTTVDYCGIGCQSQCDGGGGGDGGDDGCDGGDDGGGDGDDGYLSDIIPKSK-FDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGN 133          
BLAST of EY675563 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.406e-22
Identity = 48/93 (51.61%), Postives = 60/93 (64.52%), Query Frame = 3
Query:   42 VCPEGECCSPFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGNGVNGADHLPTRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAF 320
            VCP   CCS FGWCG T+DYC  GCQS C+   CG   P    +G+G +G   + +R +F+ +L +RND  CPA  FYTYDAF+ AA AFP F
Sbjct:   32 VCPNCLCCSQFGWCGSTSDYCGAGCQSQCSAAGCGGGGPTP-PSGSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGF 123          
BLAST of EY675563 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 5.343e-22
Identity = 66/165 (40.00%), Postives = 79/165 (47.88%), Query Frame = 3
Query:   42 VCPEGECCSPFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGNGVNGADHLPTRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNLEYTS*KKMNCWFFHLARTR-----------DGP---------PRGEPLAF----AGWLLVGGNXIFNKG 464
            VCP G CCS FGWCG T DYC  GCQS C+           G  G        L TR MF D+L++RN+  CP + FYTYDAFI AAKAFP FG    T+ +K     F LA+T            DGP          +G P A+    A W    G   + +G
Sbjct:   31 VCPGGACCSKFGWCGNTADYCGSGCQSQCSST---------GDIGQ-------LITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAF-LAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRG 178          
BLAST of EY675563 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 9.114e-22
Identity = 50/103 (48.54%), Postives = 61/103 (59.22%), Query Frame = 3
Query:   42 VCPEGECCSPFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGNGVNGADHLPTRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNLEYTS*KK 350
            +CP G CCS FGWCG TTDYC  GCQS C            G           L +R  F+ +L++RND  CPA+ FYTYDAFI AAKA+P+FGN   T+ +K
Sbjct:   38 LCPGGNCCSQFGWCGSTTDYCGPGCQSQC------------GGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRK 128          
BLAST of EY675563 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.463e-21
Identity = 66/166 (39.76%), Postives = 81/166 (48.80%), Query Frame = 3
Query:   42 VCPEGECCSPFGWCGLTTDYCCE--GCQSNCNQVVCGECDPDDGTAGNGVNGADHLPTRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNLEYTS*KKMNCWFFHLARTRDGPPRGEPLAFAGWLLVGGNXIFNKGSWVLASVRTTCD-SRTYPCSKGK 530
            +CP G CCS FGWCG T DYC +  GCQS C+             +G    G D L TR+ F+ +L +RND  CPAR FYTYDAFI AAK+FPAF      + +K     F LA+T       E    AGW    G   +        +    C     YPC+ GK
Sbjct:   32 LCPGGLCCSQFGWCGNTDDYCKKENGCQSQCSG------------SGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAF-LAQTSH-----ETTGGAGWAAPDGPYTWGYCYNRELNPADYCQWDPNYPCAPGK 179          
BLAST of EY675563 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 4.523e-21
Identity = 49/103 (47.57%), Postives = 61/103 (59.22%), Query Frame = 3
Query:   42 VCPEGECCSPFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGNGVNGADHLPTRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNLEYTS*KK 350
            +CP G CCS FGWCG TTDYC + CQS C            G           L +R  F+ +L++RND  CPA+ FYTYDAFI AAKA+P+FGN   T+ +K
Sbjct:   37 LCPGGNCCSQFGWCGSTTDYCGKDCQSQC------------GGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRK 127          
BLAST of EY675563 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.932e-20
Identity = 61/162 (37.65%), Postives = 78/162 (48.15%), Query Frame = 3
Query:   45 CPEGECCSPFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGNGVNGADHLPTRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNLEYTS*KKMNCWFFHLARTRDGPPRGEPLAFAGWLLVGGNXIFNKGSWVLASVRTTCDSRTYPCSKGK 530
            CP   CCS FGWCG T+DYC +GCQS C     G          +G  G   + +R +F+ +L +RND  C A+ FYTYDAF+ AA AFP FG    T  +K     F LA+T      G   A  G    G      +G    A+      S  +PC+ GK
Sbjct:   31 CPNCLCCSRFGWCGSTSDYCGDGCQSQCAGCGGGGTPVTPTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAF-LAQTSHETTGGWATAPDGAFAWGYCFKQERG----ATSNYCTPSAQWPCAPGK 187          
BLAST of EY675563 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.932e-20
Identity = 69/172 (40.12%), Postives = 82/172 (47.67%), Query Frame = 3
Query:   42 VCPEGECCSPFGWCGLTTDYCC-EGCQSNCNQVVCGECDPDDGTAGNGVNGADHLPTRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNLEYTS*KKMNCWFFHLARTRDGPPRGEPLAFAGWLLVGG--------NXIFNKGSWVLASVRTTCDSRTYPCSKGK 530
            +CP G CCS FGWCG T DYC   GCQS C+           G A  G  G  +L +R+ F  +L +RND  CPAR FYTYDAFI AA++FPAF      + +K     F LA+T       E    AGW    G        N   N  S   AS         YPC+ GK
Sbjct:   11 LCPGGLCCSQFGWCGSTADYCTVPGCQSQCS---------GSGPAP-GPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAF-LAQTSH-----ETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCAS------DPNYPCAPGK 160          
BLAST of EY675563 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.932e-20
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 3
Query:   42 VCPEGECCSPFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGNGVNGADHLPTRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAF 320
            +CP   CCS +GWCG T+ YC  GCQS C+   CG   P   + G G +G   + +R +F+ +L +RND  CPA+ FYTYDAF+ AA AFP+F
Sbjct:   31 LCPNCLCCSQYGWCGSTSAYCGSGCQSQCSGS-CGGGGPTPPSGGGG-SGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSF 121          
The following BLAST results are available for this feature:
BLAST of EY675563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
CHIB_POPTR8.244e-2352.04Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI6_POPTR1.077e-2252.94Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI12_ORYSJ1.406e-2251.61Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_VITVI5.343e-2240.00Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHIT_PHAVU9.114e-2248.54Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI1_THECC3.463e-2139.76Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI5_PHAVU4.523e-2147.57Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHIA_SECCE2.932e-2037.65Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI2_GOSHI2.932e-2040.12Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_ORYSJ2.932e-2048.39Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-012-C05-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675563 ID=EY675563; Name=EY675563; organism=Citrus sinensis; type=EST; length=1059bp
CCACGCGTCCGGGCTCAGCACAGAACCCCCCTAGCTGCGTTGTGTGCCCA
GAAGGGGAGTGTTGTAGTCCATTTGGTTGGTGTGGCCTAACAACAGACTA
CTGTTGTGAAGGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAAT
GTGATCCCGACGACGGGACGGCTGGCAATGGGGTGAACGGGGCAGATCAT
CTCCCCACAAGGAAGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAA
ACGATGCCCTGCCAGATGCTTCTACACTTATGATGCTTTTATAGAGGCAG
CCAAAGCTTTTCCAGCCTTTGGTAATCTGGAATATACATCGTAAAAAAAA
ATGAACTGTTGGTTTTTCCACCTGGCCCGAACTCGCGATGGACCCCCCCG
CGGGGAGCCCCTTGCGTTTGCTGGATGGCTATTAGTGGGGGGAAACGANA
TCTTTAATAAGGGAAGTTGGGTGCTTGCGTCCGTCCGAACTACTTGTGAT
TCCCGAACATATCCATGTTCGAAGGGGAAATAACTAATGAGCCAAAAGTC
CAATTTCAACTCCACTTTGGAATTTGCAATTTTACTTAAAGGGGCCGGAA
AAAGCCTTTGGGGGGGTGGGACGTTGTTTGAAAAAAATCCCAAAAACTAA
CTTTGCCCCCTGAATTTCATTATCTTTTCTTTTTCAAGTTCATCACAAAT
TCGGGGGTTTTGGGGGAGGGACTGGCCCCCGCCCCCCCTAAATACCCCAC
CCGTGCCCACCCAAATTTTCTTTTATTCCAACAAAAAGGGGAAAAACACA
TCACACAAAAAAGAAGACGTTAAAACCCCGCGGCCGCGGGTTTTCCCGGG
ATATTACCGGTTTTAAACACCAAAATATATTTAAAAATCCAAAGGGGGGG
AAAAATTTTATAATTTGTGGGGGCATACATATGGGGGGGAAAGAGGCACG
CCGCTTAACACAGAAAAACCCCCTGAATTTTAGGGGAGTTCTTCTCTTTC
ATCCACCCTTTTTTCATAGTTGTGGGGGAGAACAAGTATTGTTGTTGGGG
AAGAAATAT
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