EY675522

Overview
NameEY675522
Unique NameEY675522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1146
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675522 vs. ExPASy Swiss-Prot
Match: BCR_ECOLI (Bicyclomycin resistance protein OS=Escherichia coli (strain K12) GN=bcr PE=1 SV=4)

HSP 1 Score: 97.8265 bits (242), Expect = 1.247e-19
Identity = 47/109 (43.12%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  232 IILILGALSAFAPLAIDFYLPGFPAMAVAFGTDEKHIQLTLAVYFTGLAIGQLIYGPLADRFGRRGPLLNGVTLFTLASFACAYTPSLEWLISARFSQPLGGCAGMVIL 558
            I+ ILG L+   PL+ID YLP  P ++  FG      Q+TL+ Y  G A+GQLIYGP+AD FGR+  +L G  +F  A+ ACA   +++ LI  RF   L   A  V++
Sbjct:   11 IVFILGLLAMLMPLSIDMYLPALPVISAQFGVPAGSTQMTLSTYILGFALGQLIYGPMADSFGRKPVVLGGTLVFAAAAVACALANTIDQLIVMRFFHGLAAAAASVVI 119          
BLAST of EY675522 vs. ExPASy Swiss-Prot
Match: YDGK_BACSU (Uncharacterized MFS-type transporter ydgK OS=Bacillus subtilis GN=ydgK PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.011e-18
Identity = 48/110 (43.64%), Postives = 65/110 (59.09%), Query Frame = 1
Query:  226 LRIILILGALSAFAPLAIDFYLPGFPAMAVAFGTDEKHIQLTLAVYFTGLAIGQLIYGPLADRFGRRGPLLNGVTLFTLASFACAYTPSLEWLISARFSQPLGGCAGMVI 555
            L +  +LG L+   PL ID YLP FP +A         +QL+L     GL IGQLI GP++D  GRR PLL  + LF L+S  CA +P++  L++ARF Q     AG+V+
Sbjct:   11 LALAFLLGMLAILGPLNIDMYLPSFPEIAKDLSASASLVQLSLTACLVGLTIGQLIVGPVSDAQGRRKPLLICIFLFALSSLFCALSPNITTLVAARFLQGFTASAGLVL 120          
BLAST of EY675522 vs. ExPASy Swiss-Prot
Match: CMLA_PSEAE (Chloramphenicol resistance protein OS=Pseudomonas aeruginosa GN=cmlA PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.577e-14
Identity = 44/106 (41.51%), Postives = 55/106 (51.89%), Query Frame = 1
Query:  235 ILILGALSAFAPLAIDFYLPGFPAMAVAFGTDEKHIQLTLAVYFTGLAIGQLIYGPLADRFGRRGPLLNGVTLFTLASFACAYTPSLEWLISARFSQPLGGCAGMV 552
            +L+L      A L +D YLP  P M  A GT    IQLTL  Y   +  GQL++GPL+DR GRR  LL G   + +AS   A T S E  +  R  Q  G  A +V
Sbjct:   16 VLLLSPFDLLASLGMDMYLPAVPFMPNALGTTASTIQLTLTTYLVMIGAGQLLFGPLSDRLGRRPVLLGGGLAYVVASMGLALTSSAEVFLGLRILQACGASACLV 121          
BLAST of EY675522 vs. ExPASy Swiss-Prot
Match: YDHC_ECOLI (Inner membrane transport protein ydhC OS=Escherichia coli (strain K12) GN=ydhC PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 4.589e-14
Identity = 41/109 (37.61%), Postives = 60/109 (55.05%), Query Frame = 1
Query:  229 RIILILGALSAFAPLAIDFYLPGFPAMAVAFGTDEKHIQLTLAVYFTGLAIGQLIYGPLADRFGRRGPLLNGVTLFTLASFACAYTPSLEWLISARFSQPLGGCAGMVI 555
            R ++ L  LS    LA D YLP F A+     T    +  +L+++  G A  QL++GPL+DR+GR+  LL G+T+F L S    +  +   L+  RF Q +G CA  VI
Sbjct:    6 RFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVI 114          
BLAST of EY675522 vs. ExPASy Swiss-Prot
Match: MDTL_SHEON (Multidrug resistance protein mdtL OS=Shewanella oneidensis GN=mdtL PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.132e-11
Identity = 41/109 (37.61%), Postives = 56/109 (51.38%), Query Frame = 1
Query:  229 RIILILGALSAFAPLAIDFYLPGFPAMAVAFGTDEKHIQLTLAVYFTGLAIGQLIYGPLADRFGRRGPLLNGVTLFTLASFACAYTPSLEWLISARFSQPLG-GCAGMV 552
            R +L    L    P  ID YL G P +A   G  E  + +  +VY  G+A   L  G LADR GR+   L G  LF LAS+  A + + +  + ARF+Q +G GC  +V
Sbjct:    3 RYLLCSFGLVLMYPTGIDMYLVGLPQIASQLGASEAQLHIAFSVYLAGMATTMLFAGSLADRIGRKPITLFGALLFALASYFAAGSQTSDLFLIARFAQGIGAGCCYVV 111          
BLAST of EY675522 vs. ExPASy Swiss-Prot
Match: BCRH_RICBR (Uncharacterized transporter RBE_0856 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0856 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.784e-11
Identity = 36/105 (34.29%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  241 ILGALSAFAPLAIDFYLPGFPAMAVAFGTDEKHIQLTLAVYFTGLAIGQLIYGPLADRFGRRGPLLNGVTLFTLASFACAYTPSLEWLISARFSQPLGGCAGMVI 555
            +L  L   +P+    Y  G P++   F TD    Q+T ++Y+ G A+G L  G L+D +GRR  +L G+ ++ ++S    + P++E L+ ARF Q  G   G VI
Sbjct:   11 MLLCLFTLSPITETIYTSGLPSITEYFNTDGSTTQITSSLYYLGFALGILTLGRLSDIYGRRPVVLFGLCIYAISSIISIFAPNIETLMLARFVQAFGVSVGSVI 115          
The following BLAST results are available for this feature:
BLAST of EY675522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
BCR_ECOLI1.247e-1943.12Bicyclomycin resistance protein OS=Escherichia col... [more]
YDGK_BACSU4.011e-1843.64Uncharacterized MFS-type transporter ydgK OS=Bacil... [more]
CMLA_PSEAE1.577e-1441.51Chloramphenicol resistance protein OS=Pseudomonas ... [more]
YDHC_ECOLI4.589e-1437.61Inner membrane transport protein ydhC OS=Escherich... [more]
MDTL_SHEON2.132e-1137.61Multidrug resistance protein mdtL OS=Shewanella on... [more]
BCRH_RICBR2.784e-1134.29Uncharacterized transporter RBE_0856 OS=Rickettsia... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-011-F10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675522 ID=EY675522; Name=EY675522; organism=Citrus sinensis; type=EST; length=1146bp
CCTGCCGGGTACGGTTCCCGGATTCCCGGGTCGACCTCGCAGCAAAGGAA
GTCGGCGTGGAACCCCCCTGCTGTCGCCGGCGGAGGTGATCAACCTGATC
AGCCCGGAAGGCTACAGCGTCAAGCTCGCCTGACTTTCTGATAGTTAGCG
AGCTAACTTAATGTTCAAGGCACCCATGCCCGGCTAGACTGTCGGGCTGC
CGACTCACCTGGGTGCCTGATGAACCTTCGTATAATCCTGATTTTGGGGG
CCTTGAGCGCGTTCGCGCCGTTGGCCATCGACTTCTACCTGCCGGGTTTT
CCGGCCATGGCCGTGGCATTCGGTACCGACGAAAAACATATTCAGCTGAC
CTTGGCCGTGTACTTCACGGGCCTGGCAATCGGCCAGTTGATCTATGGGC
CGCTGGCGGACCGCTTTGGCCGACGCGGGCCGCTGCTCAACGGTGTCACC
CTGTTTACCCTGGCGTCGTTCGCGTGTGCGTACACCCCTTCCCTGGAATG
GCTGATCAGCGCGCGTTTCTCCCAGCCCTTGGGTGGGTGCGCGGGGATGG
TGATTCTCCCGAGCCGGTGGTCACCCATAAATGCGACTCCGGAGGGCTTA
GACCAGGGGGTTTTCCGAAATAGAAGCTGGTTCCCAGGCCGGGACCCAAA
TCCTCGCGAACGAAGGGGGAGGGGACGATGTTACGGACTCTAGGGCGTGG
ATAAAAACTAATCATGGAATTAGACGAAATTAGTATAAGAAAGGGGATCA
AAATACGATGAAGAAAGGGTATACGAGGGAAATATAAACGAGTGCTCTTA
TTCGAAGACTGTTAAGGGATATGTAGACTCGAAAGTGTGTCCATTGCTAG
GAAATGCGAGGGAGAAAGATGAAAGTGGAAACAAATAAGATGACAGAGGT
TGTAGAAACGAGAAACAGGAACACCTTGGAGCGATCGGTTAATTAGTAAG
AGTGCAAAATAGAAAAATGAAGGAGATGAATACAAGCGTGAGATCATGCA
AAGTAGTGAATATGAAGAACGAAGGACCAAGTAATTTGCGCAACACTTTA
GCAGAACATACATANAGAATAGTCATATACNAAAAACACGAACGCCGAAC
GTGTGGCGATCGGTAGACGATGAACAACACTTCCTTGCTNNACGGG
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