EY675500

Overview
NameEY675500
Unique NameEY675500
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length493
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8537 contig Csv1_Contig8537:1..493. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY675500 vs. ExPASy Swiss-Prot
Match: PP310_ARATH (Pentatricopeptide repeat-containing protein At4g14190, chloroplastic OS=Arabidopsis thaliana GN=At4g14190 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 4.299e-13
Identity = 35/70 (50.00%), Postives = 51/70 (72.86%), Query Frame = 2 
Query:  200 SLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSKVQANSP 409
            S++  +T+ T+LL    H H+ L++L +RL+   SCPL++LQ DGDW+KDHFWAVIRFL+ SS++    P
Sbjct:   51 SINGDATQPTSLL----HHHRFLSSLTRRLSLSGSCPLRLLQEDGDWSKDHFWAVIRFLRQSSRLHEILP 116
The following BLAST results are available for this feature:
BLAST of EY675500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP310_ARATH4.299e-1350.00Pentatricopeptide repeat-containing protein At4g14... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-011-D05-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675500 ID=EY675500; Name=EY675500; organism=Citrus sinensis; type=EST; length=493bp
CCACGCGTCCGGGAGAAGACATAACACGCGTTGGCAAATGGATAGTGTTG
TATCCCTGCATCTGCATACCAATAATAATACCCATTACAAAGTCAGACTC
AACAAAAATAAGAAGAATAAGCTGACACATAACCGCGTCTTCTTCTCCAA
AATCCTAATCAGAAAACCCATCAGCTGTTGTTGTTTGTCATCGGCTCCGT
CACTTGATTATCATTCGACAAAACACACGACCCTTCTTGTTGAGAGCTAC
CATGAGCACCAAGCACTCAACGCATTAATTCAGAGGCTCAACAAGAAAGT
TTCATGCCCTCTTCAAATTCTTCAACACGATGGAGATTGGACCAAAGATC
ACTTTTGGGCTGTCATCAGATTTCTCAAAAATTCCTCGAAGGTCCAGGCA
AATTCCCCAGGTACTCTGCCTCTCTCTATTTAATTAAATAAGGGGAAAAA
ATATGTGAGTCTTTCGTGTTGAGCGGTAAAAAAAAAAAAAAAG
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