EY675498
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY675498 vs. ExPASy Swiss-Prot
Match: NPC1_MOUSE (Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.723e-23 Identity = 56/110 (50.91%), Postives = 78/110 (70.91%), Query Frame = 2 Query: 11 GIAVEPLVHLVHAFLVS-HGPRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGP----PSRHIIIEKQQADE 325 GI+VE H+ AF +S G R R+++AL+ MG+SVFSGITLTK G++VL FA+S+IF ++YF+MYLA+V++G HGL+FLPV+LS GP RH E+ + E Sbjct: 1162 GISVEFCSHITRAFTMSTKGSRVSRAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFEIFYFRMYLAMVLLGATHGLIFLPVLLSYIGPSVNKAKRHTTYERYRGTE 1271
BLAST of EY675498 vs. ExPASy Swiss-Prot
Match: NPC1_HUMAN (Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 1.723e-23 Identity = 53/92 (57.61%), Postives = 73/92 (79.35%), Query Frame = 2 Query: 11 GIAVEPLVHLVHAFLVS-HGPRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGP 283 GI+VE H+ AF VS G R +R+++AL+ MG+SVFSGITLTK G++VL FA+S+IF ++YF+MYLA+V++G HGL+FLPV+LS GP Sbjct: 1162 GISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLSYIGP 1253
BLAST of EY675498 vs. ExPASy Swiss-Prot
Match: NPC1_PIG (Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 6.547e-23 Identity = 52/92 (56.52%), Postives = 72/92 (78.26%), Query Frame = 2 Query: 11 GIAVEPLVHLVHAFLVS-HGPRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGP 283 GI+VE H+ AF +S G R R+++AL+ MG+SVFSGITLTK G++VL FA+S+IF ++YF+MYLA+V++G HGL+FLPV+LS GP Sbjct: 1161 GISVEFCSHITRAFTLSTKGSRVDRAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAIVLLGATHGLIFLPVLLSYIGP 1252
BLAST of EY675498 vs. ExPASy Swiss-Prot
Match: NPC1_YEAST (Niemann-Pick type C-related protein 1 OS=Saccharomyces cerevisiae GN=NCR1 PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 4.856e-18 Identity = 48/97 (49.48%), Postives = 65/97 (67.01%), Query Frame = 2 Query: 11 GIAVEPLVHLVHAFLV----SHGPRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPS 289 G+ VE VH+V +F V + N R +L+T+G SV GITLTK +GV VL FA+S+IF V+YF+M+ L+I+ LH L+FLP +LSLFG S Sbjct: 1064 GLGVEFCVHIVRSFTVVPSETKKDANSRVLYSLNTIGESVIKGITLTKFIGVCVLAFAQSKIFDVFYFRMWFTLIIVAALHALLFLPALLSLFGGES 1160
BLAST of EY675498 vs. ExPASy Swiss-Prot
Match: NPCL1_MOUSE (Niemann-Pick C1-like protein 1 OS=Mus musculus GN=Npc1l1 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 5.368e-17 Identity = 43/118 (36.44%), Postives = 80/118 (67.80%), Query Frame = 2 Query: 2 TRPGIAVEPLVHLVHAFLVSHGP-RNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPP-SRHIIIEKQQADEPSTSSNLS 349 T G++VE + H+ +F VS P R +R++ A MG++VF+G+ +T G+++L FA++++ +++F++ L + ++G LHGLVFLPV+LS GP ++ +++E++ A E + S S Sbjct: 1174 TAVGMSVEFVSHITRSFAVSTKPTRLERAKDATIFMGSAVFAGVAMTNFPGILILGFAQAQLIQIFFFRLNLLITLLGLLHGLVFLPVVLSYLGPDVNQALVLEEKLATEAAMVSEPS 1291
BLAST of EY675498 vs. ExPASy Swiss-Prot
Match: NPCL1_RAT (Niemann-Pick C1-like protein 1 OS=Rattus norvegicus GN=Npc1l1 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 7.011e-17 Identity = 42/118 (35.59%), Postives = 77/118 (65.25%), Query Frame = 2 Query: 2 TRPGIAVEPLVHLVHAFLVSHGP-RNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHIIIEKQQ-------ADEPS 331 T G++VE + H+ +F VS P R +R++ A MG++VF+G+ +T G+++L FA++++ +++F++ L + ++G LHGLVFLPV+LS GP ++++++ A EPS Sbjct: 1174 TAVGMSVEFVSHITRSFAVSTKPTRLERAKDATVFMGSAVFAGVAMTNFPGILILGFAQAQLIQIFFFRLNLLITLLGLLHGLVFLPVVLSYLGPDVNQALVQEEKLASEAAVAPEPS 1291
BLAST of EY675498 vs. ExPASy Swiss-Prot
Match: NPCL1_HUMAN (Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 3.480e-16 Identity = 40/107 (37.38%), Postives = 77/107 (71.96%), Query Frame = 2 Query: 11 GIAVEPLVHLVHAFLVSHGPR-NQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPP-SRHIIIEKQQADE 325 G++VE + H+ +F +S P +R+++A +MG++VF+G+ +T L G++VL A++++ +++F++ L + ++G LHGLVFLPVILS GP + + +E+++A+E Sbjct: 1203 GMSVEFVSHITRSFAISTKPTWLERAKEATISMGSAVFAGVAMTNLPGILVLGLAKAQLIQIFFFRLNLLITLLGLLHGLVFLPVILSYVGPDVNPALALEQKRAEE 1309
BLAST of EY675498 vs. ExPASy Swiss-Prot
Match: PTC2_MOUSE (Protein patched homolog 2 OS=Mus musculus GN=Ptch2 PE=2 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 7.256e-14 Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 2 Query: 11 GIAVEPLVHLVHAFLVSHGPRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHIIIEKQ 313 GI VE VH+ FL SHG RN R+ AL A V G T L+G+++L + + + Y+F + L ++G LHGL+ LPV+LS+ GPP + + + K+ Sbjct: 1027 GIGVEFTVHVALGFLTSHGSRNLRAASALEQTFAPVTDGAVST-LLGLLMLAGSNFDFIIRYFFVVLTVLTLLGLLHGLLLLPVLLSILGPPPQVVQVYKE 1126
BLAST of EY675498 vs. ExPASy Swiss-Prot
Match: PTC1_CAEEL (Protein patched homolog 1 OS=Caenorhabditis elegans GN=ptc-1 PE=1 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 8.022e-13 Identity = 39/94 (41.49%), Postives = 60/94 (63.83%), Query Frame = 2 Query: 2 TRPGIAVEPLVHLVHAFLVSHGPRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGP 283 T GI VE VH+V +FL + G R+QR+ A+ + V G + + L+G+++L F+ E V Y+F + AL+ IG ++GL+ LPV+LS FGP Sbjct: 1243 TAVGIGVEFTVHVVVSFLTALGTRSQRTSSAVDRVFVPVIHG-SFSTLLGILMLGFSEFEFVVKYFFIVMTALICIGIINGLILLPVLLSWFGP 1335
BLAST of EY675498 vs. ExPASy Swiss-Prot
Match: PTC2_HUMAN (Protein patched homolog 2 OS=Homo sapiens GN=PTCH2 PE=2 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 1.368e-12 Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 2 Query: 11 GIAVEPLVHLVHAFLVSHGPRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHIIIEKQQAD 322 GI VE VH+ FL + G RN R+ AL A V G ++ L+G+++L + + V Y+F L ++G LHGLV LPV+LS+ GPP I + K+ + Sbjct: 1027 GIGVEFTVHVALGFLTTQGSRNLRAAHALEHTFAPVTDG-AISTLLGLLMLAGSHFDFIVRYFFAALTVLTLLGLLHGLVLLPVLLSILGPPPEVIQMYKESPE 1129 The following BLAST results are available for this feature:
BLAST of EY675498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >EY675498 ID=EY675498; Name=EY675498; organism=Citrus sinensis; type=EST; length=578bpback to top |