EY675486
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY675486 vs. ExPASy Swiss-Prot
Match: NPC1_MOUSE (Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 5.145e-24 Identity = 56/109 (51.38%), Postives = 79/109 (72.48%), Query Frame = 3 Query: 3 IAVESCVHLVHAFLVS-HGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGP----PSRHIIIEKQQADE 314 I+VE C H+ AF +S G+R R+++AL+ MG+SVFSGITLTK G++VL FA+S+IF ++YF+MYLA+V++G HGL+FLPV+LS GP RH E+ + E Sbjct: 1163 ISVEFCSHITRAFTMSTKGSRVSRAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFEIFYFRMYLAMVLLGATHGLIFLPVLLSYIGPSVNKAKRHTTYERYRGTE 1271
BLAST of EY675486 vs. ExPASy Swiss-Prot
Match: NPC1_HUMAN (Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 5.145e-24 Identity = 53/91 (58.24%), Postives = 74/91 (81.32%), Query Frame = 3 Query: 3 IAVESCVHLVHAFLVS-HGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGP 272 I+VE C H+ AF VS G+R +R+++AL+ MG+SVFSGITLTK G++VL FA+S+IF ++YF+MYLA+V++G HGL+FLPV+LS GP Sbjct: 1163 ISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLSYIGP 1253
BLAST of EY675486 vs. ExPASy Swiss-Prot
Match: NPC1_PIG (Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.955e-23 Identity = 52/91 (57.14%), Postives = 73/91 (80.22%), Query Frame = 3 Query: 3 IAVESCVHLVHAFLVS-HGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGP 272 I+VE C H+ AF +S G+R R+++AL+ MG+SVFSGITLTK G++VL FA+S+IF ++YF+MYLA+V++G HGL+FLPV+LS GP Sbjct: 1162 ISVEFCSHITRAFTLSTKGSRVDRAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAIVLLGATHGLIFLPVLLSYIGP 1252
BLAST of EY675486 vs. ExPASy Swiss-Prot
Match: NPC1_YEAST (Niemann-Pick type C-related protein 1 OS=Saccharomyces cerevisiae GN=NCR1 PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.450e-18 Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 3 Query: 3 IAVESCVHLVHAFLV----SHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPS 278 + VE CVH+V +F V + + N R +L+T+G SV GITLTK +GV VL FA+S+IF V+YF+M+ L+I+ LH L+FLP +LSLFG S Sbjct: 1065 LGVEFCVHIVRSFTVVPSETKKDANSRVLYSLNTIGESVIKGITLTKFIGVCVLAFAQSKIFDVFYFRMWFTLIIVAALHALLFLPALLSLFGGES 1160
BLAST of EY675486 vs. ExPASy Swiss-Prot
Match: NPCL1_MOUSE (Niemann-Pick C1-like protein 1 OS=Mus musculus GN=Npc1l1 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 5.702e-15 Identity = 40/114 (35.09%), Postives = 76/114 (66.67%), Query Frame = 3 Query: 3 IAVESCVHLVHAFLVS-HGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPP-SRHIIIEKQQADEPSTSSNLS 338 ++VE H+ +F VS R +R++ A MG++VF+G+ +T G+++L FA++++ +++F++ L + ++G LHGLVFLPV+LS GP ++ +++E++ A E + S S Sbjct: 1178 MSVEFVSHITRSFAVSTKPTRLERAKDATIFMGSAVFAGVAMTNFPGILILGFAQAQLIQIFFFRLNLLITLLGLLHGLVFLPVVLSYLGPDVNQALVLEEKLATEAAMVSEPS 1291
BLAST of EY675486 vs. ExPASy Swiss-Prot
Match: NPCL1_RAT (Niemann-Pick C1-like protein 1 OS=Rattus norvegicus GN=Npc1l1 PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 7.447e-15 Identity = 39/114 (34.21%), Postives = 73/114 (64.04%), Query Frame = 3 Query: 3 IAVESCVHLVHAFLVS-HGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHIIIEKQQ-------ADEPS 320 ++VE H+ +F VS R +R++ A MG++VF+G+ +T G+++L FA++++ +++F++ L + ++G LHGLVFLPV+LS GP ++++++ A EPS Sbjct: 1178 MSVEFVSHITRSFAVSTKPTRLERAKDATVFMGSAVFAGVAMTNFPGILILGFAQAQLIQIFFFRLNLLITLLGLLHGLVFLPVVLSYLGPDVNQALVQEEKLASEAAVAPEPS 1291
BLAST of EY675486 vs. ExPASy Swiss-Prot
Match: NPCL1_HUMAN (Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.696e-14 Identity = 38/106 (35.85%), Postives = 74/106 (69.81%), Query Frame = 3 Query: 3 IAVESCVHLVHAFLVS-HGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPP-SRHIIIEKQQADE 314 ++VE H+ +F +S +R+++A +MG++VF+G+ +T L G++VL A++++ +++F++ L + ++G LHGLVFLPVILS GP + + +E+++A+E Sbjct: 1204 MSVEFVSHITRSFAISTKPTWLERAKEATISMGSAVFAGVAMTNLPGILVLGLAKAQLIQIFFFRLNLLITLLGLLHGLVFLPVILSYVGPDVNPALALEQKRAEE 1309
BLAST of EY675486 vs. ExPASy Swiss-Prot
Match: PTC2_MOUSE (Protein patched homolog 2 OS=Mus musculus GN=Ptch2 PE=2 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 3.129e-13 Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = 3 Query: 3 IAVESCVHLVHAFLVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHIIIEKQ 302 I VE VH+ FL SHG+RN R+ AL A V G T L+G+++L + + + Y+F + L ++G LHGL+ LPV+LS+ GPP + + + K+ Sbjct: 1028 IGVEFTVHVALGFLTSHGSRNLRAASALEQTFAPVTDGAVST-LLGLLMLAGSNFDFIIRYFFVVLTVLTLLGLLHGLLLLPVLLSILGPPPQVVQVYKE 1126
BLAST of EY675486 vs. ExPASy Swiss-Prot
Match: PTC2_HUMAN (Protein patched homolog 2 OS=Homo sapiens GN=PTCH2 PE=2 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 5.901e-12 Identity = 39/103 (37.86%), Postives = 59/103 (57.28%), Query Frame = 3 Query: 3 IAVESCVHLVHAFLVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHIIIEKQQAD 311 I VE VH+ FL + G+RN R+ AL A V G ++ L+G+++L + + V Y+F L ++G LHGLV LPV+LS+ GPP I + K+ + Sbjct: 1028 IGVEFTVHVALGFLTTQGSRNLRAAHALEHTFAPVTDG-AISTLLGLLMLAGSHFDFIVRYFFAALTVLTLLGLLHGLVLLPVLLSILGPPPEVIQMYKESPE 1129
BLAST of EY675486 vs. ExPASy Swiss-Prot
Match: PTC1_DANRE (Protein patched homolog 1 OS=Danio rerio GN=ptch1 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.901e-12 Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 3 Query: 3 IAVESCVHLVHAFLVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPS 278 I VE VH+ FL + G+RN RS A+ M A V G ++ L+GV++L + + + Y+F + L ++G L+GLV LPV+LSL GPP+ Sbjct: 1081 IGVEFTVHIALGFLTAIGDRNTRSAVAMEHMFAPVIDG-AISTLLGVLMLAGSEFDFIMRYFFAVLAILTLLGILNGLVLLPVLLSLMGPPA 1171 The following BLAST results are available for this feature:
BLAST of EY675486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >EY675486 ID=EY675486; Name=EY675486; organism=Citrus sinensis; type=EST; length=985bpback to top |