EY675448

Overview
NameEY675448
Unique NameEY675448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length962
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675448_ssr831 microsatellite EY675448_ssr831:831..842. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY675448 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 1.090e-79
Identity = 149/200 (74.50%), Postives = 166/200 (83.00%), Query Frame = 1
Query:    4 LQELHLIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLYIVKKPSSTAPNTASIGTG 603
            LQEL +++ RK +LE +  DN     DL  RG  IEDL L+FTLPGYP+YIL+ GDE VDI NLEEYISLVVDATVK G+ RQ+EAFR+GFNQVFDITSLQIFTP ELD+LLCGRRELWE   LAEHIKFDHGY AKSPAI+NLLEIMGE T DQQRAFCQFVTGAPRLPPGGLAVLNPKL IV+K SST+ + A+ G G
Sbjct: 1642 LQELRVVVARKHYLEGVGGDNSSTISDLCLRGCRIEDLSLEFTLPGYPEYILRSGDEIVDITNLEEYISLVVDATVKRGVTRQIEAFRSGFNQVFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEIMGELTADQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTS-SAAANGAG 1840          
BLAST of EY675448 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.176e-49
Identity = 103/196 (52.55%), Postives = 133/196 (67.86%), Query Frame = 1
Query:    4 LQELHLIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDEN--VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLYIVKKPSSTAPNT 585
            L EL  ++ RK+       D+     DL F G  IEDLCL+F LPGY DY L P   N  V+++NLEEYI  +V+ATV  GI +Q+EAFR+GFNQVF I  L+IF   EL+ +LCG  +L+    + +HIKFDHGYT+ SP +  LL+I+ EF  +QQRAF QFVTG+PRLP GGLA L+PKL IV+K  S + +T
Sbjct: 1266 LVELQALVRRKKLFAEAHGDSGAAKCDLSFHGTKIEDLCLEFALPGYTDYDLAPYSANDMVNLDNLEEYIKGIVNATVCNGIQKQVEAFRSGFNQVFSIEHLRIFNEEELETMLCGECDLFSMNEVLDHIKFDHGYTSSSPPVEYLLQILHEFDREQQRAFLQFVTGSPRLPHGGLASLSPKLTIVRKHGSDSSDT 1461          
BLAST of EY675448 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.548e-38
Identity = 89/194 (45.88%), Postives = 121/194 (62.37%), Query Frame = 1
Query:   22 IICRKQHLE---SMTSDNCEEAVD-LRFRGAPIEDLCLDFTLPGYPDYILKPGDEN--VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRR-ELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLYIVKKPSSTAPN 582
            I+ +K+ LE   S T ++ + A++ L   G  +EDL LDFTLPG+P+  LK G ++  V I+NLEEY+ LV+   +  G+ RQ ++FR GF  VF ++ LQ F P ELD LLCG + + W+   L E  + DHGYT  S A+  L EI+  F  +QQR F QFVTG+PRLP GG   LNP L IV+K   +  N
Sbjct: 1755 IVRQKKRLEQDKSQTKESLQYALETLTMNGCSVEDLGLDFTLPGFPNIELKKGGKDIPVTIHNLEEYLRLVIFWALNEGVSRQFDSFRDGFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTEN 1948          
BLAST of EY675448 vs. ExPASy Swiss-Prot
Match: YDE1_SCHPO (Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe GN=SPAC12B10.01c PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.596e-30
Identity = 70/154 (45.45%), Postives = 96/154 (62.34%), Query Frame = 1
Query:  106 IEDLCLDFTLPGYPDYILKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLYIVKK 561
            +EDL LDFTLPG+P   L P   +  +   N+ +Y++ V+D TV  G+ +Q+EAF+ GF+ VF  TSLQ+ T HEL  L     E W  A L + I  DHGYT +SP I  LL +M +    +QR F QF+TG+ +LP GG A LNP L +V++
Sbjct: 1443 LEDLHLDFTLPGFPSIELIPDGASTPVTTFNVSDYLNYVIDYTVGKGVQQQLEAFQNGFSSVFPYTSLQVLTEHELVTLFGTVDEDWSYATLMKSIVADHGYTMESPTIQRLLTLMSQMNFQEQRDFLQFITGSRKLPIGGFAGLNPPLTVVRR 1596          
BLAST of EY675448 vs. ExPASy Swiss-Prot
Match: HECD1_HUMAN (E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 5.314e-26
Identity = 66/174 (37.93%), Postives = 100/174 (57.47%), Query Frame = 1
Query:  106 IEDLCLDFT------LPGYPDYILKPG--DENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRE-LWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLYIVKKPSSTAPNTASIGT 600
            IEDL L+F       + G+    LKP   DE + ++N EEY+ L+ D  + TGI +QMEAFR GFN+VF +  L  F+  E+  +LCG +   W    +  + +   GYT  SP  +  + ++   + D+++AF QF TG   LPPGGLA L+P+L +V+K  +T  +  S+ T
Sbjct: 2407 IEDLGLNFQFCPSSRIYGFTAVDLKPSGEDEMITMDNAEEYVDLMFDFCMHTGIQKQMEAFRDGFNKVFPMEKLSSFSHEEVQMILCGNQSPSWAAEDIINYTEPKLGYTRDSPGFLRFVRVLCGMSSDERKAFLQFTTGCSTLPPGGLANLHPRLTVVRKVDATDASYPSVNT 2580          
BLAST of EY675448 vs. ExPASy Swiss-Prot
Match: UFD4_YEAST (Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae GN=UFD4 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.447e-23
Identity = 62/154 (40.26%), Postives = 87/154 (56.49%), Query Frame = 1
Query:  106 IEDLCLDFTLPGYPDYILKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLYIVKK 561
            +E L L FT+PG  D  L PG  N  +N  N+EEYI  V+D  +  GI +Q++AF  GF++VF    + I  P EL  +     E W  A L  ++  +HGYT  S  I + + I+  F   ++R F QF+TG+P+LP GG   LNPK  +V K
Sbjct: 1279 LESLSLTFTVPGNDDIELIPGGCNKSLNSSNVEEYIHGVIDQILGKGIEKQLKAFIEGFSKVFSYERMLILFPDELVDIFGRVEEDWSMATLYTNLNAEHGYTMDSSIIHDFISIISAFGKHERRLFLQFLTGSPKLPIGGFKSLNPKFTVVLK 1432          
BLAST of EY675448 vs. ExPASy Swiss-Prot
Match: UBE3A_HUMAN (Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UBE3A PE=1 SV=4)

HSP 1 Score: 86.2705 bits (212), Expect = 2.923e-16
Identity = 60/172 (34.88%), Postives = 90/172 (52.33%), Query Frame = 1
Query:   85 LRFRGAPIEDLCLDFTLP-----GYPD-YILKPGDENVDINN--LEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLYIVKKPSST 573
            L + G   +D+ + F +      G P  Y LK   + + I N   +E+++L  D  +   + +Q +AFR GF+ V + + L+ +F P E++ L+CG R L +  AL E  ++D GYT  S  I    EI+  FT +Q+R F QF TG  R P GGL  L  K+ I K    T
Sbjct:  666 LEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNL-DFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL--KMIIAKNGPDT 834          
BLAST of EY675448 vs. ExPASy Swiss-Prot
Match: UBE3A_MOUSE (Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ube3a PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.220e-15
Identity = 58/172 (33.72%), Postives = 89/172 (51.74%), Query Frame = 1
Query:   85 LRFRGAPIEDLCLDFTLP-----GYPD-YILKPGDENVDINN--LEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLYIVKKPSST 573
            L + G+  +D+ + F +      G P  Y LK   + + I N   +E++    D  +   + +Q +AFR GF+ V + + L+ +F P E++ L+CG R L +  AL E  ++D GYT +S  I    EI+  FT +Q+R F  F TG  R P GGL  L  K+ I K    T
Sbjct:  676 LEYEGSVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVISYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNL-DFQALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLLFTTGTDRAPVGGLGKL--KMIIAKNGPDT 844          
BLAST of EY675448 vs. ExPASy Swiss-Prot
Match: WWP2_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus musculus GN=Wwp2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.800e-13
Identity = 48/132 (36.36%), Postives = 68/132 (51.52%), Query Frame = 1
Query:  157 LKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVL 534
            LK G EN+ +   N EEYI L+ D     G+  Q +AF  GFN+V  +  L+ F   EL+ +LCG +E+    W+  A+  H      YT  S  I    +++ E   +++    QFVTG  RLP GG A L
Sbjct:  687 LKEGGENIRVTEENKEEYIMLLTDWRFTRGVEEQTKAFLDGFNEVAPLEWLRYFDEKELELMLCGMQEIDMSDWQKNAIYRH------YTKSSKQIQWFWQVVKEMDNEKRIRLLQFVTGTCRLPVGGFAEL 812          
BLAST of EY675448 vs. ExPASy Swiss-Prot
Match: ITCH_MOUSE (E3 ubiquitin-protein ligase Itchy OS=Mus musculus GN=Itch PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.501e-12
Identity = 49/145 (33.79%), Postives = 73/145 (50.34%), Query Frame = 1
Query:  157 LKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVL----NPKLYIVKK 561
            LKP   N+ +   N EEYI +V +  +  G+  Q +AF  GFN++     LQ F   EL+ LLCG +E+    W+  A+  H      YT  S  I+   + + E   +++    QFVTG  RLP GG A L     P+ + ++K
Sbjct:  681 LKPNGGNILVTEENKEEYIRMVAEWRLSRGVEEQTQAFFEGFNEILPQQYLQYFDAKELEVLLCGMQEIDLNDWQRHAIYRH------YTRTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADLMGSNGPQKFCIEK 819          
The following BLAST results are available for this feature:
BLAST of EY675448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
UPL3_ARATH1.090e-7974.50E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis th... [more]
UPL4_ARATH1.176e-4952.55E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis th... [more]
TRIPC_HUMAN3.548e-3845.88Probable E3 ubiquitin-protein ligase TRIP12 OS=Hom... [more]
YDE1_SCHPO1.596e-3045.45Probable ubiquitin fusion degradation protein C12B... [more]
HECD1_HUMAN5.314e-2637.93E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens... [more]
UFD4_YEAST1.447e-2340.26Ubiquitin fusion degradation protein 4 OS=Saccharo... [more]
UBE3A_HUMAN2.923e-1634.88Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UB... [more]
UBE3A_MOUSE4.220e-1533.72Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ub... [more]
WWP2_MOUSE8.800e-1336.36NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus... [more]
ITCH_MOUSE1.501e-1233.79E3 ubiquitin-protein ligase Itchy OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-010-F07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675448 ID=EY675448; Name=EY675448; organism=Citrus sinensis; type=EST; length=962bp
ATTTTGCAAGAGTTGCACCTCATCATTTGTCGAAAACAACATTTAGAATC
AATGACCTCTGATAATTGCGAAGAAGCTGTGGACTTGCGTTTTCGTGGGG
CCCCGATTGAAGATCTTTGCCTGGATTTTACTCTTCCTGGTTATCCAGAC
TATATTTTGAAACCAGGAGATGAAAATGTTGACATTAATAACTTGGAGGA
ATACATATCCTTGGTAGTTGATGCCACTGTCAAGACAGGCATCATGCGGC
AAATGGAAGCTTTTAGAGCTGGCTTCAATCAGGTCTTTGACATCACATCA
TTACAAATATTTACTCCTCATGAATTGGACCATCTGCTTTGTGGCCGTAG
AGAGTTGTGGGAGCCTGCGGCGCTTGCTGAGCATATAAAATTCGATCATG
GATACACTGCCAAGAGTCCTGCAATTGTTAACTTACTAGAGATCATGGGA
GAATTCACACCAGATCAGCAGCGTGCCTTCTGTCAGTTTGTTACTGGTGC
ACCTCGTCTTCCACCGGGTGGGTTGGCGGTGCTGAATCCAAAGCTTTACA
TTGTCAAAAAGCCTTCTTCCACTGCACCTAATACAGCCTCAATTGGGACC
GGGCCCTTCGGAAATCACGGAGGAGGACTTGCCCAAGTGCCATGACTTGG
GCCATTTCCCGGAACCTTCCTCCTTACCTCTCCCAAGGAAATTATTTACA
AAAAACTGGGTTTAGGCAAAAAACCCAAGGGGCAGGGATTTTTTTGTTTT
TGGTCTGGGTTTTTCCCAAAACTTAAACCCAAGGGGCCCTTTTTTATTAT
TTATATTATTGGGGGTATACACATTGTACATTTCTTTCTTTCCCGGGGGG
GGTTTTTTCTTCTTTTTTTTTAAAAAAATAGCGTCCATATATTTTTTTAC
ATATAAAAAAAAAAGGCGGGGGGCGTTTTTTTTCCCTGCCCCCCCCCCTG
TGTATGATAACT
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