EY675436

Overview
NameEY675436
Unique NameEY675436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1052
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675436_ssr259 microsatellite EY675436_ssr259:259..270. BLAST: Citrus ESTs to SwissProt
Homology
BLAST of EY675436 vs. ExPASy Swiss-Prot
Match: DHMH_METEA (Methylamine dehydrogenase heavy chain OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=mauB PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 3.008e-17
Identity = 63/218 (28.90%), Postives = 97/218 (44.50%), Query Frame = 2
Query:   29 VDTQSRSVTAEIPIPGCVLNYPVGTPRFASLCGDGSLQVVTLNEQGQETSRNRTHFFDPNAEKLNERAVNV-GDXXXXXXXXXXIRPVDFSGDEPKILPSWSLTTDAEKKTGWAPGGWQLMAVAPKLNRMYVLMHDNHEPMKWEDPSTIIWAYDLKTMKKIATLEAPTPVWSMQATGDDKPLLLG-AHFEGGLQIFNLKTNKLTGSMGKVAKTATQIM 676
            VD   +     I +P C   +P     F   C DGSL  V +   G+  ++    F   N   +N  A +              I  +D S  + K LP+    TDAEKK GWAPGGWQ +A   + +R++ L+ D     K + PS  ++  D KT K+I  +E    + S+  + D KP L   +  +  L IF+ +T K   S+ ++      +M
Sbjct:  190 VDLAGKKFDRMIEVPDCYHIFPSSNDTFFMHCRDGSLLKVGIGADGKSQTKRTEIFHKENEYLINHPAYSPKSGRLVWPTYTGKIFQIDLSSQDAKFLPAIEAFTDAEKKEGWAPGGWQQVAYHRESDRIF-LLGDQRAASKHKAPSRFLFVIDAKTGKRINKIELKHEIDSVGVSQDAKPQLYALSTGDKALYIFDPETGKEVSSVNQLGAGPQVVM 406          
BLAST of EY675436 vs. ExPASy Swiss-Prot
Match: AAUB_ALCFA (Aralkylamine dehydrogenase heavy chain OS=Alcaligenes faecalis GN=aauB PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.273e-15
Identity = 47/151 (31.13%), Postives = 71/151 (47.02%), Query Frame = 2
Query:   74 GC--VLNYPVGTPRFASLCGDGSLQVVTLNEQGQETSRNRT-HFFDPNAEKLNERAVNVGDXXXXXXXXXXIRPVDFSGDEPKILPSWSLTTDAEKKTGWAPGGWQLMAVAPKLNRMYVLMHDNHEPMKWEDPSTIIWAYDLKTMKKIATL 517
            GC  V+  P     F ++CGDG L  + L E G+  S++R+   F    + +        D          +   DFSGDE K+   WSL  D +K   W PGG+ L+ +     RMYV MH + +    + P+  IW  D KT +++A +
Sbjct:  181 GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARI 331          
BLAST of EY675436 vs. ExPASy Swiss-Prot
Match: DHMH_PARDE (Methylamine dehydrogenase heavy chain OS=Paracoccus denitrificans GN=mauB PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.070e-14
Identity = 54/184 (29.35%), Postives = 85/184 (46.20%), Query Frame = 2
Query:   29 VDTQSRSVTAEIPIPGCVLNYPVGTPRFASLCGDGSLQVVTLNEQGQETSRNRTHFFDPNAEKL-NERAVNV-GDXXXXXXXXXXIRPVDFSGDEPKILPSWSLTTDAEKKTGWAPGGWQLMAVAPKLNRMYVLMHDNHEPMKWEDPSTIIWAYDLKTMKKIATLEAPTPVWSMQATGDDKPLL 574
            VD + ++    + +P C   +P     F   C DGSL  V    +G     + T  F P  E L N  A +              I  +D S  + K LP+    T+AE+  GW PGGWQ +A    L+R+Y+L+ D  +  + +  S ++   D KT +++A  E    + S+  + D+KPLL
Sbjct:  196 VDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH-TEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLV-DQRDEWRHKTASRLLVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLL 377          
BLAST of EY675436 vs. ExPASy Swiss-Prot
Match: DHMH_METME (Methylamine dehydrogenase heavy chain OS=Methylophilus methylotrophus GN=mauB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.805e-12
Identity = 57/218 (26.15%), Postives = 87/218 (39.91%), Query Frame = 2
Query:   29 VDTQSRSVTAEIPIPGCVLNYPVGTPRFASLCGDGSLQVVTLNEQGQETSRNRTHFFDPNAEKL--NERAVNVGDXXXXXXXXXXIRPVDFSGDEPKILPSWSLTTDAEKKTGWAPGGWQLMAVAPKLNRMYVLMHDNHEPMKWEDPSTIIWAYDLKTMKKIATLEAPTPVWSMQATGDDKPLLLGAHFEG-GLQIFNLKTNKLTGSMGKVAKTATQI 673
            VD Q ++    + +P C   +P     F   C DGSL   T + +G  T +  T  F    E L  N    N  +          I     S    + L    + TD EK   W PGGWQ +A     N +Y L+ D  E    + PS  ++  D  + K++  +E    + S+  + DDKP L     E   L  F+    K   S+ ++ +  + I
Sbjct:  185 VDLQQKAFVKIMNVPDCYHIFPTANQNFFMHCRDGSLMQFTYDSKGN-TKQKPTKIFHAEKEYLLNNPYYSNSNNHLTWPTYEGKIFQAKLSESGAEFLKPIEVFTDKEKADKWRPGGWQTIAFHKARNELY-LLADQREKWTHKLPSRFVFVVDATSGKRLRRIELKHEINSIAVSQDDKPYLYAVSEEAKTLFTFDAVNGKALSSIDELGRAPSMI 400          
BLAST of EY675436 vs. ExPASy Swiss-Prot
Match: DHMH_METFK (Methylamine dehydrogenase heavy chain OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=mauB PE=3 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 8.478e-12
Identity = 57/216 (26.39%), Postives = 85/216 (39.35%), Query Frame = 2
Query:   29 VDTQSRSVTAEIPIPGCVLNYPVGTPRFASLCGDGSLQVVTLNEQGQETSRNRTHFFDPNAEKL--NERAVNVGDXXXXXXXXXXIRPVDFSGDEPKILPSWSLTTDAEKKTGWAPGGWQLMAVAPKLNRMYVLMHDNHEPMKWEDPSTIIWAYDLKTMKKIATLEAPTPVWSMQATGDDKPLLLGAHFEG-GLQIFNLKTNKLTGSMGKVAKTAT 667
            VD + +S    + IP C   +PV    F   C DGSLQ    +++G       T  F    + L  N    N             I     +  +   +  + L T+AEKK  W PGGWQ++A     N +YVL  D          S  ++  D  T K++  ++    +  +  T D  P L     E   L  FN  T K TG + ++ +  T
Sbjct:  180 VDLEKKSFVKMMDIPDCYQIFPVPNQSFYMHCRDGSLQQFGYDDKGNLKPMKPTKVFHGEDDYLFVNPYYSNGSGRLVWPTYEGRIFQAKLTDKKVDFMKPFELFTEAEKKANWRPGGWQVVAYHKARNEIYVLA-DQRAKWTHVTASRYVFVVDGTTGKRLRRIDLGHEIDGISVTQDANPNLYAVSAEAKTLFTFNAVTGKETGKVDELGRAPT 394          
The following BLAST results are available for this feature:
BLAST of EY675436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
DHMH_METEA3.008e-1728.90Methylamine dehydrogenase heavy chain OS=Methyloba... [more]
AAUB_ALCFA6.273e-1531.13Aralkylamine dehydrogenase heavy chain OS=Alcalige... [more]
DHMH_PARDE1.070e-1429.35Methylamine dehydrogenase heavy chain OS=Paracoccu... [more]
DHMH_METME3.805e-1226.15Methylamine dehydrogenase heavy chain OS=Methyloph... [more]
DHMH_METFK8.478e-1226.39Methylamine dehydrogenase heavy chain OS=Methyloba... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-010-E06-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675436 ID=EY675436; Name=EY675436; organism=Citrus sinensis; type=EST; length=1052bp
CGGGACAGCAGTACGGTCCGGATTCCGGGTCGACACCCAGTCCCGCTCCG
TCACCGCCGAAATCCCTATCCCCGGCTGCGTACTCAACTACCCCGTAGGT
ACCCCCCGCTTCGCCTCCCTGTGCGGCGACGGCAGCCTGCAAGTGGTGAC
GCTGAACGAGCAGGGCCAGGAAACCTCACGCAACCGCACGCACTTCTTCG
ACCCCAACGCCGAGAAGCTCAACGAACGCGCGGTGAACGTGGGCGACACC
TACTACTTCACCACCACCACCGGCACCATCCGCCCGGTAGATTTCTCCGG
CGATGAGCCGAAAATCCTGCCGTCCTGGTCACTCACCACCGACGCGGAAA
AGAAAACCGGCTGGGCTCCGGGTGGCTGGCAGTTGATGGCTGTGGCACCA
AAGCTCAACCGCATGTACGTGCTGATGCACGACAACCACGAGCCGATGAA
GTGGGAAGACCCGAGCACCATCATCTGGGCCTATGACCTCAAGACCATGA
AGAAGATAGCCACCCTGGAAGCCCCGACCCCGGTCTGGAGCATGCAAGCC
ACCGGCGACGACAAGCCCCTGTTGCTGGGCGCCCACTTCGAAGGCGGCTT
GCAAATCTTCAACCTCAAGACCAATAAACTCACCGGTAGCATGGGCAAGG
TAGCCAAAACCGCAACCCAAATCATGAACTACTAAAAAGGTTCGGCCAGG
CATATCCAACCCGATCTTCCATCTTTGCCCACCCCCCCTCCCCATCCGGG
GGGTTGCTGGGCCAGGGGCCGCGAACCCAAAATTTGGCCCGCCCCCGGCC
ACCCTTTCCCCCGGGGAAAGGGGGGCAAAATTACACTTTTGGTTGCCCAA
AAGGGAAGGGAACTCCCCCCCCCCCCCCCCCGGGGGAAAACCCCGGGGGG
CGGGAAAAGGTGGGGGATTTGGGCTTTTTGGCCCGGGGGGGGTGTTCCCC
GGGGCGCCCGCCTTTTTTTTGGGGGGGCCCCCCCCCCCCCACGCGCCCCC
CCCCCGCCGGGGCGCCTTGTGGTTTTTTGCGCTCTCAATTGTTATTCCCC
CC
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