EY675407

Overview
NameEY675407
Unique NameEY675407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1042
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY675407 vs. ExPASy Swiss-Prot
Match: HSF30_SOLPE (Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.733e-17
Identity = 56/139 (40.29%), Postives = 81/139 (58.27%), Query Frame = 3 
Query:   24 KRRLTATPSMENFQETISVAPVGLDCGPVVDYTVQDQNELTSMETEIETFLSSPVDNESSSDIDNPNAGSVPAPSGGNFSSVNETIWEDFMADDLIAGD--PEEVVVKDQSEAEVELEDLVATPTDWGEEMQDLVDQMG 434
            KRRLT TPS+    + ++ +              + + EL S    IE   S+ +DNESSS++      SV   +G +   V + IWE+ +++DLI+GD   EEVVV +Q E +VE+EDLV    +WGEE+QDLVDQ+G
Sbjct:  228 KRRLTMTPSVTGSDQPMNYS----------SSLQESEAELAS----IEMLFSAAMDNESSSNV---RPDSVVTANGTDMEPVADDIWEELLSEDLISGDRAAEEVVVVEQPEFDVEVEDLVVKTPEWGEELQDLVDQLG 349
The following BLAST results are available for this feature:
BLAST of EY675407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HSF30_SOLPE1.733e-1740.29Heat shock factor protein HSF30 OS=Solanum peruvia... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-010-B09-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675407 ID=EY675407; Name=EY675407; organism=Citrus sinensis; type=EST; length=1042bp
GGGAGGTGTTCAAACTGCCCATAAAGCGGAGACTAACGGCCACACCAAGC
ATGGAGAACTTCCAAGAAACAATTTCCGTGGCACCTGTGGGTCTGGATTG
TGGTCCGGTTGTAGATTACACAGTCCAAGATCAAAATGAATTGACCTCCA
TGGAAACTGAGATAGAGACGTTTCTTTCTTCGCCGGTGGACAACGAATCA
AGCAGTGATATCGACAACCCAAATGCTGGTTCAGTACCTGCCCCAAGTGG
TGGCAATTTCAGTAGTGTCAATGAGACAATATGGGAGGATTTTATGGCTG
ACGATCTGATTGCCGGCGATCCGGAAGAAGTGGTGGTGAAGGATCAGTCA
GAGGCTGAGGTGGAATTGGAGGATTTGGTTGCAACACCTACAGATTGGGG
TGAGGAAATGCAAGACCTAGTAGATCAGATGGGGTTATCTCAGGTGACAA
ACTATTTGCTGCACAAAATTGTTGAAAGACTTTCCCTAAGGGCTGGAGTT
GGTCTCTGCAACTTCCTTCCGGTTTTCCGTAATGCTTGGAAGTCGCGAAA
ATTGCCAAAAAGGCCCAACAAAATTTTTGTTCCTGGTTCAACTGTTATCC
TTAAAAGGATAAAAAAAATTCCCGATTTTTTTGTTTGGAAATGGTCAAGA
GGTTTCCCCTTTTTTGAATCCCTTTGCCCCCTTTAAATGTTTTTAATTTT
TTCTTGCCCACATGTTCGCAGGGCGGACCCCAAAAAAAAAAGGGGGGGAA
TTTTCACCCCCGCGGATGAATTTTCACAAATAATGCCCCCAAAGATTAAC
ACCGCCCATAATCTACTTGCCCCCCCCGGGAAATTTTGGCAGATTTACTT
TAACACATAAAATATATTATTTCCGTGGGTGTCTTATTAACACAGCCTTC
ATGCAAAATAACAAAAATATGATGAAAATAAAAACCCAAAAGGGGGTGAT
GGGTGGGAGAAAAACAAGTATTTTGATTTTTCTATTCCCAGCAATTCCAG
CAACAAAAATACACGTCTCTCTTCTTTTTTGCTGGGGTGAGA
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