EY675406

Overview
NameEY675406
Unique NameEY675406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1081
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675406 vs. ExPASy Swiss-Prot
Match: NSUN2_CHICK (tRNA (cytosine-5-)-methyltransferase NSUN2 OS=Gallus gallus GN=NSUN2 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 4.819e-34
Identity = 70/130 (53.85%), Postives = 90/130 (69.23%), Query Frame = 1
Query:   64 VLCDVPCSGDGFLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDK-GIWLASHKHVRKFRRIGIVPSMFP 450
            +LCDVPCSGDG +RK  D+W+KW       LH LQ++IA RG+  L  GGR+VYSTCS+NP+ENEAV+A +L K +G++EL DVS+E+P L   PG+ KWKV  K G W    K V   R+  I P+MFP
Sbjct:  265 ILCDVPCSGDGTMRKNIDVWKKWTTQNSLQLHGLQLRIATRGVEQLAEGGRMVYSTCSLNPIENEAVIASLLEKSQGALELADVSSELPGLKRMPGITKWKVMLKDGQWFEEWKDVPSNRQTQIRPTMFP 394          
BLAST of EY675406 vs. ExPASy Swiss-Prot
Match: NSUN2_XENTR (tRNA (cytosine-5-)-methyltransferase NSUN2 OS=Xenopus tropicalis GN=nsun2 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 4.079e-33
Identity = 71/137 (51.82%), Postives = 93/137 (67.88%), Query Frame = 1
Query:   46 QLLLYS-VLCDVPCSGDGFLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDK-GIWLASHKHVRKFRRIGIVPSMFP 450
            ++L Y  +LCDVPCSGDG LRK  D+W+KW       LH LQ++IA RG+  L  GGR+VYSTCS+NPVE+EAV+A +L K EGS+EL DV++E+P L   PG+ +WKV  K G W    + +   R   I P+MFP
Sbjct:  260 EVLYYDRILCDVPCSGDGTLRKNIDVWKKWTTLNSLQLHGLQIRIATRGVEQLAEGGRMVYSTCSLNPVEDEAVIASLLDKSEGSLELADVASEIPGLKWMPGITQWKVMTKEGHWYEKWEDIPTSRHTQIRPTMFP 396          
BLAST of EY675406 vs. ExPASy Swiss-Prot
Match: NSUN2_HUMAN (tRNA (cytosine-5-)-methyltransferase NSUN2 OS=Homo sapiens GN=NSUN2 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 6.958e-33
Identity = 71/137 (51.82%), Postives = 91/137 (66.42%), Query Frame = 1
Query:   46 QLLLYS-VLCDVPCSGDGFLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDK-GIWLASHKHVRKFRRIGIVPSMFP 450
            ++L Y  +LCDVPCSGDG +RK  D+W+KW       LH LQ++IA RG   L  GGR+VYSTCS+NP+E+EAV+A +L K EG++EL DVSNE+P L   PG+ +WKV  K G W      V   R   I P+MFP
Sbjct:  258 EILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFP 394          
BLAST of EY675406 vs. ExPASy Swiss-Prot
Match: NSUN2_MOUSE (tRNA (cytosine-5-)-methyltransferase NSUN2 OS=Mus musculus GN=Nsun2 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 2.644e-32
Identity = 71/137 (51.82%), Postives = 92/137 (67.15%), Query Frame = 1
Query:   46 QLLLYS-VLCDVPCSGDGFLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDK-GIWLASHKHVRKFRRIGIVPSMFP 450
            ++L Y  +LCDVPCSGDG +RK  D+W+KW       LH LQ++IA RG   L  GGR+VYSTCS+NPVE+EAV+A +L K EG++EL DVS E+P L   PG+ +WKV  + G W A    V + R   I P+MFP
Sbjct:  258 EILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIAALLEKSEGALELADVSAELPGLKWMPGVSQWKVMTRDGQWFADWHEVPQGRHTQIRPTMFP 394          
BLAST of EY675406 vs. ExPASy Swiss-Prot
Match: NSUN2_XENLA (tRNA (cytosine-5-)-methyltransferase NSUN2 OS=Xenopus laevis GN=nsun2 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 4.510e-32
Identity = 69/137 (50.36%), Postives = 92/137 (67.15%), Query Frame = 1
Query:   46 QLLLYS-VLCDVPCSGDGFLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDK-GIWLASHKHVRKFRRIGIVPSMFP 450
            ++L Y  +LCDVPCSGDG +RK  D+W+KW       LH LQ++IA RG+  L  GGR+VYSTCS+NPVE+EAV+  +L K EGS+EL DV++E+P L   PG+ +W+V  K G W    + V   R   I P+MFP
Sbjct:  256 EVLYYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQIRIATRGVEQLAEGGRMVYSTCSLNPVEDEAVIVSLLDKSEGSLELADVASELPGLKWMPGITQWRVMTKEGQWFEKWEDVPTSRHTQIRPTMFP 392          
BLAST of EY675406 vs. ExPASy Swiss-Prot
Match: NSUN2_DROME (tRNA (cytosine-5-)-methyltransferase CG6133 OS=Drosophila melanogaster GN=CG6133 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.312e-31
Identity = 66/143 (46.15%), Postives = 91/143 (63.64%), Query Frame = 1
Query:   64 VLCDVPCSGDGFLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGI--WLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIE 486
            +LCDVPCSGDG LRK PDIW KWN+     LH +Q +I  RG  +L+VGGR+VYSTCS+NP+ENEAV+  I++  +G++ELVD  + VP L ++PG+  WK+  K +       + V +     I P MFP  +  M    +E
Sbjct:  267 ILCDVPCSGDGTLRKNPDIWLKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRIIKDADGALELVDAGHLVPGLKYKPGMTDWKLATKEVDQIFTRFEEVPESLHTIIRPGMFPLPADEMAKIGLE 409          
BLAST of EY675406 vs. ExPASy Swiss-Prot
Match: NCL1_YEAST (tRNA (cytosine-5-)-methyltransferase NCL1 OS=Saccharomyces cerevisiae GN=NCL1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.358e-28
Identity = 57/107 (53.27%), Postives = 77/107 (71.96%), Query Frame = 1
Query:   64 VLCDVPCSGDGFLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGI 384
            +LCDVPCSGDG +RK  ++W+ WN   G GLH++Q+ I  RG+ LLK  GR+VYSTCS+NP+ENEAVVAE LRK    + LV+  +++P LI   G+ KW V D+ +
Sbjct:  254 ILCDVPCSGDGTMRKNVNVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENEAVVAEALRKWGDKIRLVNCDDKLPGLIRSKGVSKWPVYDRNL 360          
BLAST of EY675406 vs. ExPASy Swiss-Prot
Match: YF6H_SCHPO (Putative tRNA (cytosine-5-)-methyltransferase C23C4.17 OS=Schizosaccharomyces pombe GN=SPAC23C4.17 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 3.025e-28
Identity = 65/141 (46.10%), Postives = 84/141 (59.57%), Query Frame = 1
Query:   64 VLCDVPCSGDGFLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIE 486
            +L DVPCSGDG  RK   +WR+W+      LH LQ++I +RG+ LLKVGG +VYSTCS+NP+ENEAVV   L+   G+V LVDVS ++P L   PGL  WKV D  +            +I +  SM+P     M    IE
Sbjct:  267 ILADVPCSGDGTFRKNLSLWREWSANSAFSLHPLQLRILIRGLQLLKVGGCLVYSTCSINPIENEAVVTAALKATGGAVSLVDVSKKLPLLKRDPGLLSWKVLDDSLNEFQSPAENTNDKIELTESMWPLPEEEMSKLHIE 407          
BLAST of EY675406 vs. ExPASy Swiss-Prot
Match: NCL1_SCHPO (tRNA (cytosine-5-)-methyltransferase ncl1 OS=Schizosaccharomyces pombe GN=ncl1 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.150e-27
Identity = 57/107 (53.27%), Postives = 76/107 (71.03%), Query Frame = 1
Query:   64 VLCDVPCSGDGFLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGI 384
            +L DVPCSGDG  RK   +W +W++    GLH+ Q++I MRG+ LL+ GGR+VYSTCS+NP+ENEAVV+ +L    GSV LVDVS+E+PQL    G+  W V D  +
Sbjct:  237 ILADVPCSGDGTFRKNIALWNEWSLKTALGLHATQIKILMRGLQLLEKGGRLVYSTCSLNPIENEAVVSAVLNATRGSVRLVDVSSELPQLKRSQGVDNWVVCDSDL 343          
The following BLAST results are available for this feature:
BLAST of EY675406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
NSUN2_CHICK4.819e-3453.85tRNA (cytosine-5-)-methyltransferase NSUN2 OS=Gall... [more]
NSUN2_XENTR4.079e-3351.82tRNA (cytosine-5-)-methyltransferase NSUN2 OS=Xeno... [more]
NSUN2_HUMAN6.958e-3351.82tRNA (cytosine-5-)-methyltransferase NSUN2 OS=Homo... [more]
NSUN2_MOUSE2.644e-3251.82tRNA (cytosine-5-)-methyltransferase NSUN2 OS=Mus ... [more]
NSUN2_XENLA4.510e-3250.36tRNA (cytosine-5-)-methyltransferase NSUN2 OS=Xeno... [more]
NSUN2_DROME1.312e-3146.15tRNA (cytosine-5-)-methyltransferase CG6133 OS=Dro... [more]
NCL1_YEAST1.358e-2853.27tRNA (cytosine-5-)-methyltransferase NCL1 OS=Sacch... [more]
YF6H_SCHPO3.025e-2846.10Putative tRNA (cytosine-5-)-methyltransferase C23C... [more]
NCL1_SCHPO1.150e-2753.27tRNA (cytosine-5-)-methyltransferase ncl1 OS=Schiz... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-010-B08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675406 ID=EY675406; Name=EY675406; organism=Citrus sinensis; type=EST; length=1081bp
GCAGTACGGTCGGAATTCCGGGTCGACCACGCGTCCGAACTGGGTCAGCT
TCTCCTTTACAGTGTGCTATGTGATGTTCCTTGCAGTGGAGACGGCTTCC
TGCGCAAGGCTCCAGATATCTGGAGAAAATGGAATGTAGGATTAGGCAAC
GGGCTCCATAGCCTACAAGTTCAGATAGCCATGCGAGGTATATCTCTACT
CAAAGTTGGTGGAAGAATTGTTTATTCTACCTGCTCCATGAATCCAGTGG
AGAATGAGGCTGTGGTTGCTGAGATTTTGCGGAAATGTGAAGGATCTGTT
GAACTCGTTGATGTCTCAAATGAGGTTCCCCAACTTATTCATCGGCCAGG
TCTTAGAAAGTGGAAGGTACGTGACAAGGGCATCTGGTTAGCTTCCCACA
AACATGTTCGGAAATTCCGAAGAATCGGGATTGTTCCCAGCATGTTCCCT
TCTGGCAGTAGCCATATGGACGCAACTGACATTGAACCTAAGCATGGGAA
TGTTACTGATGTAAATTCTGAAGAAGGACTTCAGCAAGTGGAAGATGTTT
TGACTTCGGCTGATGATTTGGGAAGAGGAAGTCTCCGATTCTTCCTTTAA
AACGTTGCATGGAGGTTAGTTCCTCATGGATCAAAACTCTGGGAGCCTTT
TTCCTTGGCTGTCCTCCAAAAAAATTTCCCCCCGCTTGCCCGGTAGTCCA
CGGAGAAAACTATTCCACCCCAAAAAAAAAAAAAATGCCCCCCCAAAAAA
TGGAGGATTCCCCCTTAAAAAATTTCCAAAACCCGGGAAATCCGAAGGAA
AGTGAAAGGGGAAGGGGGGGGTGGATTTTAACAAGAAGGGGAACAAGAAA
AAAAAAAATATCAAAAAGGGCTTCTTGGGGGGGGGGTATTTTTTTTTTTG
AAAAAAGAAAAAAGGGGGGGGTCGGGGGGGGAAAACCCGATTATCCCCTT
TGTGAAGAGGTGGAAAAAGAAGGGCACATATTTTGGCGGAGAGAAAAATA
GGTAAAGAGGGCCTCGCTGTTTATTTAAACCGCGCGAAAAAAACAACAAA
AATATTTCCGCATAAAAAAAAAAAAAAGGGC
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