EY675399

Overview
NameEY675399
Unique NameEY675399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length964
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675399 vs. ExPASy Swiss-Prot
Match: ILR3_ARATH (Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 2.200e-40
Identity = 73/119 (61.34%), Postives = 84/119 (70.59%), Query Frame = 1
Query:   97 RFLELGSMLEPGRPPKTDKATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKKKLEQQVKAMSA--PSGFLPHPXXXXXXXXXXXXXXXNKLVPFIGYP 447
            +F+ELG++LEPG PPKTDKA IL D VRM+ QLR EAQKLK S   LQ+KIKELK EKNELRDEKQRLK +K+KLEQQ+KAM+A  PS F   P               NK+VP I YP
Sbjct:   90 KFMELGAILEPGNPPKTDKAAILVDAVRMVTQLRGEAQKLKDSNSSLQDKIKELKTEKNELRDEKQRLKTEKEKLEQQLKAMNAPQPSFFPAPPMMPTAFASAQGQAPGNKMVPIISYP 208          

HSP 2 Score: 51.2174 bits (121), Expect = 2.200e-40
Identity = 21/24 (87.50%), Postives = 23/24 (95.83%), Query Frame = 2
Query:  446 PGVALWQFMPPAAVDTSQDHVLSP 517
            PGVA+WQFMPPA+VDTSQDHVL P
Sbjct:  208 PGVAMWQFMPPASVDTSQDHVLRP 231          
BLAST of EY675399 vs. ExPASy Swiss-Prot
Match: BH115_ARATH (Transcription factor bHLH115 OS=Arabidopsis thaliana GN=BHLH115 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.507e-34
Identity = 63/121 (52.07%), Postives = 79/121 (65.29%), Query Frame = 1
Query:   97 RFLELGSMLEPGRPPKTDKATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKKKLEQQVKAMSAPSG----FLPHPXXXXXXXXXXXXXXXNKLVPFIGYP 447
            +F EL S+LEPGR PKTDK  I++D +RM+ Q R EAQKLK     LQEKIKELK EKNELRDEKQ+LK +K++++QQ+KA+         FLP+P               +KLVPF  YP
Sbjct:   85 KFTELSSVLEPGRTPKTDKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQLKAIKTQPQPQPCFLPNP-----QTLSQAQAPGSKLVPFTTYP 200          

HSP 2 Score: 50.447 bits (119), Expect = 3.507e-34
Identity = 21/24 (87.50%), Postives = 22/24 (91.67%), Query Frame = 2
Query:  446 PGVALWQFMPPAAVDTSQDHVLSP 517
            PG A+WQFMPPAAVDTSQDHVL P
Sbjct:  200 PGFAMWQFMPPAAVDTSQDHVLRP 223          
BLAST of EY675399 vs. ExPASy Swiss-Prot
Match: BH104_ARATH (Transcription factor bHLH104 OS=Arabidopsis thaliana GN=BHLH104 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.841e-27
Identity = 58/92 (63.04%), Postives = 75/92 (81.52%), Query Frame = 1
Query:   97 RFLELGSMLEPGRPPKTDKATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKKKLEQQVKAMSAP-SGFLPH 369
            RF++L S+LEPGR PKTDK  IL D +R++ QLR EA KL+++ + L E+IK LKAEKNELR+EK  LKADK+K EQQ+K+M+AP SGF+PH
Sbjct:  149 RFMDLSSVLEPGRTPKTDKPAILDDAIRILNQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAPSSGFIPH 240          

HSP 2 Score: 25.7942 bits (55), Expect = 5.841e-27
Identity = 9/20 (45.00%), Postives = 13/20 (65.00%), Query Frame = 2
Query:  458 LWQFMPPAAVDTSQDHVLSP 517
            +W +MP +  DTS+D  L P
Sbjct:  261 MWHYMPQSVRDTSRDQELRP 280          
BLAST of EY675399 vs. ExPASy Swiss-Prot
Match: BH034_ARATH (Transcription factor bHLH34 OS=Arabidopsis thaliana GN=BHLH34 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.255e-24
Identity = 54/95 (56.84%), Postives = 76/95 (80.00%), Query Frame = 1
Query:   97 RFLELGSMLEPGRPPKTDKATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKKKLEQQVKAMSAPS-GFLP--HP 372
            +F++L S+LEPGR PKTDK+ IL D +R++ QLR EA +L+++ + L E+IK LKA+KNELR+EK  LKA+K+K+EQQ+K+M  PS GF+P  HP
Sbjct:  181 KFMDLSSVLEPGRTPKTDKSAILDDAIRVVNQLRGEAHELQETNQKLLEEIKSLKADKNELREEKLVLKAEKEKMEQQLKSMVVPSPGFMPSQHP 275          

HSP 2 Score: 25.0238 bits (53), Expect = 3.255e-24
Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = 2
Query:  446 PGVALWQFMPPAAVDTSQD 502
            P + +W  +PPA  DTS+D
Sbjct:  294 PNMPMWSPLPPADRDTSRD 312          
BLAST of EY675399 vs. ExPASy Swiss-Prot
Match: BH121_ARATH (Transcription factor bHLH121 OS=Arabidopsis thaliana GN=BHLH121 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.155e-12
Identity = 40/94 (42.55%), Postives = 64/94 (68.09%), Query Frame = 1
Query:  100 FLELGSMLEPGRPPKTDKATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKKKL----EQQVKAMSAPSGFLPH 369
            F+ELG++L+P RP K DKATIL+D V+++++L +E  KLK     L ++ +EL  EKN+LR+EK  LK+D + L    +Q++++MS     + H
Sbjct:   78 FVELGNVLDPERP-KNDKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQEKNDLREEKTSLKSDIENLNLQYQQRLRSMSPWGAAMDH 170          
BLAST of EY675399 vs. ExPASy Swiss-Prot
Match: BH011_ARATH (Transcription factor bHLH11 OS=Arabidopsis thaliana GN=BHLH11 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.852e-11
Identity = 34/78 (43.59%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   97 RFLELGSMLEPGRPPKTDKATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKKKLEQQ 330
            +FLELG+ L+P RP K+DKA++L+D ++M++ +  +  +LK   E L ++ +EL  EK+ELR+EK  LK+D + L  Q
Sbjct:   63 QFLELGNALDPNRP-KSDKASVLTDTIQMLKDVMNQVDRLKAEYETLSQESRELIQEKSELREEKATLKSDIEILNAQ 139          
The following BLAST results are available for this feature:
BLAST of EY675399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ILR3_ARATH2.200e-4061.34Transcription factor ILR3 OS=Arabidopsis thaliana ... [more]
BH115_ARATH3.507e-3452.07Transcription factor bHLH115 OS=Arabidopsis thalia... [more]
BH104_ARATH5.841e-2763.04Transcription factor bHLH104 OS=Arabidopsis thalia... [more]
BH034_ARATH3.255e-2456.84Transcription factor bHLH34 OS=Arabidopsis thalian... [more]
BH121_ARATH1.155e-1242.55Transcription factor bHLH121 OS=Arabidopsis thalia... [more]
BH011_ARATH4.852e-1143.59Transcription factor bHLH11 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-010-A08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675399 ID=EY675399; Name=EY675399; organism=Citrus sinensis; type=EST; length=964bp
ATTACGGTTGAATGACACGCTTGATATCATTCGTTTTCTTCCCTAATTAA
CTGTTTTCCCACTTCAAATTCTCACATTTATTTGGGCATGATCTGAAGGT
TTCTGGAATTGGGTTCTATGTTGGAGCCCGGAAGACCACCCAAGACGGAC
AAGGCTACTATTTTGAGCGATGTTGTTCGAATGATGGAGCAGTTAAGAAC
TGAAGCCCAGAAACTGAAGCAATCGACTGAGGATTTGCAAGAAAAGATTA
AAGAATTGAAGGCTGAGAAGAATGAGCTCCGTGATGAGAAGCAGAGGCTA
AAGGCTGATAAAAAGAAGTTGGAACAGCAAGTCAAAGCGATGAGTGCTCC
ATCAGGGTTTTTGCCTCATCCCTCTTCAATGTCGGCTGCATTTGCTGCCC
AAAGCCAGGTTGCTAGTAACAAGCTGGTGCCTTTCATTGGTTACCCCTGG
CGTTGCATTGTGGCAATTCATGCCTCCTGCTGCTGTTGATACATCACAGG
ATCATGTACTTTCTCCCTCCGGGGGCTTAACTTGGACATCCAATTTAATA
TGCCTAATGTTGAAGGGGTGGTTTATCCGGTTTTTGGCCACCAATGGTAA
GGAAATGCCTTGGAAAAAACTGAAAAAACTTAATGGATAATGGAATAAAT
TCCTTTTTTGTTTTTTGATACCTTAATAAAAAAAAAAAAAAAAGGGGGGG
CCGCTTCTTAAAAGGGTCCAAGGCTTTATCTTTCCCCCGTGGATGGCCAA
CCTCCCAGAACCTCTTTATATTGGGGCTCCCAAAAAATTAAAATTTCATC
GGGGCCCCCCCTTTTTTTCACACCTCCTGTGACAGGGGGAAAAAAACCAC
GGGGGGCTTGGTCCACCAGCTTTTAATATTCCTCCTGGTTGGCCCCCACA
TACCCCCCCCCCTTTTTTCCACCCACATTCAGAGGGGGACTATATATATA
AGAAGAAAAAAGAA
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