EY675367

Overview
NameEY675367
Unique NameEY675367
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length971
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675367 vs. ExPASy Swiss-Prot
Match: APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 6.962e-66
Identity = 140/220 (63.64%), Postives = 161/220 (73.18%), Query Frame = 3
Query:   63 HHKKPSSMN-SHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDG-----LDLQRNTASSSGVIGRSMNEMQMEVQRKLHEQLEVQRTPSVKDWRLKEKICSQSWEKACQTLPSGETVTPGQVLRAL----LEN*GFSQLGKP*KIFVLLLIFSQFQNLNLFG 692
            H KKPSSMN S+ +R +CVQGDSGLVLTTDPKPRLRWTVELHERFVDAV QLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKE+ DHS K+G     +D+QRN ASSSG++ R+MNEMQMEVQR+LHEQLEVQR   ++    + K      E+ACQTL +GE +       A+      N G S L          L F  FQ+LN++G
Sbjct:    3 HAKKPSSMNGSYENRAMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNEMQMEVQRRLHEQLEVQRHLQLR-IEAQGKYMQSILERACQTL-AGENMAAATAAAAVGGGYKGNLGSSSLSAAVGPPPHPLSFPPFQDLNIYG 220          
BLAST of EY675367 vs. ExPASy Swiss-Prot
Match: MYBF_ARATH (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.350e-13
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 3
Query:  150 PKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFR 314
            P PRLRWT ELH  FV AV  LGG  KATPK ++++M VKGLT+ H+KSHLQ +R
Sbjct:   22 PVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76          
BLAST of EY675367 vs. ExPASy Swiss-Prot
Match: ARR2_ARATH (Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.684e-11
Identity = 43/99 (43.43%), Postives = 57/99 (57.58%), Query Frame = 3
Query:  117 QGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL------GKQPHKEFNDHSIKDGLDLQRNTASS 395
            QGD     ++  KPR+ W+VELH++FV AV QLG  DKA PK I+ +M V GLT  ++ SHLQK+R+      G   H+   +HS   G D      SS
Sbjct:  204 QGDDKEDSSSLKKPRVVWSVELHQQFVAAVNQLG-VDKAVPKKILEMMNVPGLTRENVASHLQKYRIYLRRLGGVSQHQGNMNHSFMTGQDQSFGPLSS 301          
The following BLAST results are available for this feature:
BLAST of EY675367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
APL_ARATH6.962e-6663.64Myb family transcription factor APL OS=Arabidopsis... [more]
MYBF_ARATH2.350e-1363.64Putative Myb family transcription factor At1g14600... [more]
ARR2_ARATH1.684e-1143.43Two-component response regulator ARR2 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-009-F05-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675367 ID=EY675367; Name=EY675367; organism=Citrus sinensis; type=EST; length=971bp
CCACGCGTCCGTTTGTATTCTCCAAGTCCCCTCTTAGAGAGAGAAAGAGA
ATAATGTTCCAACACCACAAGAAGCCCTCTTCTATGAATTCCCATCATGA
TAGGCCCTTGTGTGTTCAAGGTGATTCTGGCCTTGTCCTCACCACTGACC
CTAAGCCTCGTCTCCGTTGGACCGTCGAGCTCCATGAACGCTTTGTTGAT
GCTGTCACTCAGCTTGGAGGACCAGATAAGGCCACACCAAAAACTATCAT
GAGAGTTATGGGTGTGAAGGGGCTTACGCTTTACCACCTAAAAAGCCATC
TTCAGAAATTCAGGCTAGGCAAGCAACCTCACAAGGAATTCAATGATCAC
TCCATAAAGGACGGCTTAGATCTTCAACGAAACACTGCATCTTCATCTGG
CGTGATCGGTCGCAGCATGAATGAGATGCAAATGGAGGTGCAAAGAAAAC
TTCACGAACAGCTCGAGGTGCAAAGAACACCTTCAGTTAAGGATTGGAGG
CTCAAGGAAAAAATATGCAGTCAATCCTGGGAAAAAGCTTGTCAAACCCT
ACCATCTGGCGAAACCGTAACCCCCGGCCAAGTTTTAAGGGCACTATTGG
AAAATTAAGGCTTTTCCCAACTTGGGAAACCATAAAAAATTTTTGTCCTT
CTCTTAATTTTTTCACAATTTCAAAACCTTAATCTTTTTGGAGGTTTACC
TAGTTTATTTCTTCCCCAACCCAAAATAAGGGAAAGAGCAGACCTCACAA
GATACAAGGGGTCTTATCGATAATAATAATTTAAAATTTTTAGCTCCAGA
AAAAAAAAAAGACGAATAACTTTATAATAGAGGGGGGATATGTTGAATTA
GCATAAAAATACCCCTTTTTTATTGTATTTTACAATAATATTTTATAGAT
TTTACAATAATTTTTTAAAACTCAAGACGCTTGCGCGTAGGTATTAGGAC
ACATGAAAATATTAACATCAT
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