EY675353
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY675353 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.997e-52 Identity = 82/106 (77.36%), Postives = 89/106 (83.96%), Query Frame = 2 Query: 62 MATPTTQASAAVFRPCASKSRFLTGSSGTLNREVALKPVSSSA---SFKVEAK-GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLG 367 MAT TT ASA++FRPC SK RFLTGSSG LNR+++ + SSA SFKVEAK GEWLPGLASP YL GSL GDNGFDPLGLAEDPENLKW+VQAELVN RWAMLG Sbjct: 1 MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLG 106 HSP 2 Score: 64.6994 bits (156), Expect = 1.997e-52 Identity = 43/85 (50.59%), Postives = 50/85 (58.82%), Query Frame = 3 Query: 366 GVVEMLLPEVFTKIGINNVPPWEEAGKA*YFASSTTPFRNPIHSCFHYVEKKKMAGNKETGKVQPRTHFSTKQLCL-QTKLGNPG 617 GV MLLPEVFTKIGI NVP W +AGK YFASS+T F FHYVE ++ K G V F KQ L + ++G PG Sbjct: 106 GVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEF-ILFHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPKGEVGYPG 187
BLAST of EY675353 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 7.518e-52 Identity = 86/105 (81.90%), Postives = 90/105 (85.71%), Query Frame = 2 Query: 62 MATPTTQASAAVFRPCASKSRFLTGSSGTLNREVALKPV--SSSASFKVEAK-GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLG 367 MAT TTQASAA+F PC KSRFL GSSG LNR VA +PV S SASFKVEAK GEWLPGLASP YL GSLPGDNGFDPLGLAEDPENL+W+VQAELVN RWAMLG Sbjct: 1 MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLG 105 HSP 2 Score: 58.5362 bits (140), Expect = 7.518e-52 Identity = 41/85 (48.24%), Postives = 46/85 (54.12%), Query Frame = 3 Query: 366 GVVEMLLPEVFTKIGINNVPPWEEAGKA*YFASSTTPFRNPIHSCFHYVEKKKMAGNKETGKVQPRTHFSTKQLCLQT-KLGNPG 617 GV MLLPEVFT IGI NVP W AGK YFASS+T F HYVE ++ K G V F KQ L ++G PG Sbjct: 105 GVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEF-ILSHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPAGEVGYPG 186
BLAST of EY675353 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.955e-30 Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = 2 Query: 173 PVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLG 367 P S+ V+AKG WLPGL SP YL+GSL GDNGFDPL LAEDPE+L+W+VQA++VN RWAMLG Sbjct: 21 PRSTRRDVAVQAKGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLG 85 HSP 2 Score: 51.2174 bits (121), Expect = 3.955e-30 Identity = 35/86 (40.70%), Postives = 43/86 (50.00%), Query Frame = 3 Query: 366 GVVEMLLPEVFTKIGINNVPPW-EEAGKA*YFASSTTPFRNPIHSCFHYVEKKKMAGNKETGKVQPRTHFSTKQLCLQTKLGNPGR 620 GV ML+PEV TK G+ N P W GK YFASS+T R +H YVE ++ K G V F + L + G PGR Sbjct: 85 GVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALR--VHMSSTYVEIRRWQDIKNPGSVNQDPIFKSYSL-PPHECGYPGR 167
BLAST of EY675353 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 2.405e-22 Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = 2 Query: 65 ATPTTQASAAVFRPCASKSRFLTGSSGTLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLG 367 ++P++Q + ++ A+K+ FL G +++ +A S A V A + W PG P +L+GSLPGD GFDPLGL DPE+LKW QAELV+SRWAMLG Sbjct: 16 SSPSSQKNGSIVG--ATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLG 117 HSP 2 Score: 39.6614 bits (91), Expect = 2.405e-22 Identity = 17/38 (44.74%), Postives = 22/38 (57.89%), Query Frame = 3 Query: 366 GVVEMLLPEVFTKIGINNVPPWEEAGKA*YFASSTTPF 479 G + +PE TKIG+ N P W AG+ YF +TT F Sbjct: 117 GAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLF 154
BLAST of EY675353 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 7.356e-21 Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 2 Query: 113 SKSRFLTGSSGTLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLG 367 +K+ FL G +++ S+ + V A + W PG P +L+GSLPGD GFDPLGLA DPE+L+W QAELV+ RWAMLG Sbjct: 30 TKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLG 117 HSP 2 Score: 40.817 bits (94), Expect = 7.356e-21 Identity = 18/38 (47.37%), Postives = 23/38 (60.53%), Query Frame = 3 Query: 366 GVVEMLLPEVFTKIGINNVPPWEEAGKA*YFASSTTPF 479 G + +PE+ TKIGI N P W AG+ YF +TT F Sbjct: 117 GAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLF 154
BLAST of EY675353 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 6.771e-13 Identity = 46/109 (42.20%), Postives = 60/109 (55.05%), Query Frame = 2 Query: 74 TTQASAAVFRPCASKSRFLTGSSGT---LNREVALKPVSSS----ASFKVEAKGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 361 TT ++ AV +S FLTG T L V + + A+ V K W+P + S P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM Sbjct: 2 TTTSATAVLNGLSSS--FLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAM 108
BLAST of EY675353 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 3.360e-12 Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 2 Query: 86 SAAVFRPCASKSRFLTGSSGTLNREVALKPVSSSAS----------FKVEAKGEWLPG------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 361 SAAV +S FLTG G ++ + P+++ AK W+P L P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM Sbjct: 5 SAAVLNGLSSS--FLTG--GNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 108
BLAST of EY675353 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 2.178e-11 Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 2 Query: 209 KGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAML 364 K W+P + P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAML Sbjct: 57 KKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAML 114
BLAST of EY675353 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 2.178e-11 Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 2 Query: 140 SGTLNREVALKPVSSSAS---FKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAML 364 S T ++ A PV A+ + +W+PG P+YL+GS PGD GFD LGL E P NL+ Y ++EL++ RWAML Sbjct: 20 SSTKSKFAAAMPVYVGATNFMSRFSMSADWMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAML 97 The following BLAST results are available for this feature:
BLAST of EY675353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY675353 ID=EY675353; Name=EY675353; organism=Citrus sinensis; type=EST; length=965bpback to top |