EY675353

Overview
NameEY675353
Unique NameEY675353
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length965
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675353 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.997e-52
Identity = 82/106 (77.36%), Postives = 89/106 (83.96%), Query Frame = 2
Query:   62 MATPTTQASAAVFRPCASKSRFLTGSSGTLNREVALKPVSSSA---SFKVEAK-GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLG 367
            MAT TT ASA++FRPC SK RFLTGSSG LNR+++   + SSA   SFKVEAK GEWLPGLASP YL GSL GDNGFDPLGLAEDPENLKW+VQAELVN RWAMLG
Sbjct:    1 MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLG 106          

HSP 2 Score: 64.6994 bits (156), Expect = 1.997e-52
Identity = 43/85 (50.59%), Postives = 50/85 (58.82%), Query Frame = 3
Query:  366 GVVEMLLPEVFTKIGINNVPPWEEAGKA*YFASSTTPFRNPIHSCFHYVEKKKMAGNKETGKVQPRTHFSTKQLCL-QTKLGNPG 617
            GV  MLLPEVFTKIGI NVP W +AGK  YFASS+T F       FHYVE ++    K  G V     F  KQ  L + ++G PG
Sbjct:  106 GVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEF-ILFHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPKGEVGYPG 187          
BLAST of EY675353 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.518e-52
Identity = 86/105 (81.90%), Postives = 90/105 (85.71%), Query Frame = 2
Query:   62 MATPTTQASAAVFRPCASKSRFLTGSSGTLNREVALKPV--SSSASFKVEAK-GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLG 367
            MAT TTQASAA+F PC  KSRFL GSSG LNR VA +PV  S SASFKVEAK GEWLPGLASP YL GSLPGDNGFDPLGLAEDPENL+W+VQAELVN RWAMLG
Sbjct:    1 MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLG 105          

HSP 2 Score: 58.5362 bits (140), Expect = 7.518e-52
Identity = 41/85 (48.24%), Postives = 46/85 (54.12%), Query Frame = 3
Query:  366 GVVEMLLPEVFTKIGINNVPPWEEAGKA*YFASSTTPFRNPIHSCFHYVEKKKMAGNKETGKVQPRTHFSTKQLCLQT-KLGNPG 617
            GV  MLLPEVFT IGI NVP W  AGK  YFASS+T F        HYVE ++    K  G V     F  KQ  L   ++G PG
Sbjct:  105 GVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEF-ILSHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPAGEVGYPG 186          
BLAST of EY675353 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.955e-30
Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = 2
Query:  173 PVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLG 367
            P S+     V+AKG WLPGL SP YL+GSL GDNGFDPL LAEDPE+L+W+VQA++VN RWAMLG
Sbjct:   21 PRSTRRDVAVQAKGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLG 85          

HSP 2 Score: 51.2174 bits (121), Expect = 3.955e-30
Identity = 35/86 (40.70%), Postives = 43/86 (50.00%), Query Frame = 3
Query:  366 GVVEMLLPEVFTKIGINNVPPW-EEAGKA*YFASSTTPFRNPIHSCFHYVEKKKMAGNKETGKVQPRTHFSTKQLCLQTKLGNPGR 620
            GV  ML+PEV TK G+ N P W    GK  YFASS+T  R  +H    YVE ++    K  G V     F +  L    + G PGR
Sbjct:   85 GVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALR--VHMSSTYVEIRRWQDIKNPGSVNQDPIFKSYSL-PPHECGYPGR 167          
BLAST of EY675353 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.405e-22
Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = 2
Query:   65 ATPTTQASAAVFRPCASKSRFLTGSSGTLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLG 367
            ++P++Q + ++    A+K+ FL G    +++ +A     S A   V A  +   W PG   P +L+GSLPGD GFDPLGL  DPE+LKW  QAELV+SRWAMLG
Sbjct:   16 SSPSSQKNGSIVG--ATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLG 117          

HSP 2 Score: 39.6614 bits (91), Expect = 2.405e-22
Identity = 17/38 (44.74%), Postives = 22/38 (57.89%), Query Frame = 3
Query:  366 GVVEMLLPEVFTKIGINNVPPWEEAGKA*YFASSTTPF 479
            G   + +PE  TKIG+ N P W  AG+  YF  +TT F
Sbjct:  117 GAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLF 154          
BLAST of EY675353 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.356e-21
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  113 SKSRFLTGSSGTLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLG 367
            +K+ FL G    +++        S+ +  V A  +   W PG   P +L+GSLPGD GFDPLGLA DPE+L+W  QAELV+ RWAMLG
Sbjct:   30 TKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLG 117          

HSP 2 Score: 40.817 bits (94), Expect = 7.356e-21
Identity = 18/38 (47.37%), Postives = 23/38 (60.53%), Query Frame = 3
Query:  366 GVVEMLLPEVFTKIGINNVPPWEEAGKA*YFASSTTPF 479
            G   + +PE+ TKIGI N P W  AG+  YF  +TT F
Sbjct:  117 GAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLF 154          
BLAST of EY675353 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.771e-13
Identity = 46/109 (42.20%), Postives = 60/109 (55.05%), Query Frame = 2
Query:   74 TTQASAAVFRPCASKSRFLTGSSGT---LNREVALKPVSSS----ASFKVEAKGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 361
            TT ++ AV    +S   FLTG   T   L   V  +  +      A+  V  K  W+P + S      P +L+GSLPGD GFDPLGL +DP  LKWY +AEL++ RWAM
Sbjct:    2 TTTSATAVLNGLSSS--FLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAM 108          
BLAST of EY675353 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.360e-12
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 2
Query:   86 SAAVFRPCASKSRFLTGSSGTLNREVALKPVSSSAS----------FKVEAKGEWLPG------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 361
            SAAV    +S   FLTG  G  ++ +   P+++                 AK  W+P       L  P +L+GSLPGD GFDPLGL +DP  LKWY +AEL++ RWAM
Sbjct:    5 SAAVLNGLSSS--FLTG--GNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 108          
BLAST of EY675353 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.178e-11
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 2
Query:  209 KGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAML 364
            K  W+P +        P +L+GSLPGD GFDPLGL +DP  LKWY +AEL++ RWAML
Sbjct:   57 KKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAML 114          
BLAST of EY675353 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.178e-11
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 2
Query:  140 SGTLNREVALKPVSSSAS---FKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAML 364
            S T ++  A  PV   A+    +     +W+PG   P+YL+GS PGD GFD LGL E P NL+ Y ++EL++ RWAML
Sbjct:   20 SSTKSKFAAAMPVYVGATNFMSRFSMSADWMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAML 97          
The following BLAST results are available for this feature:
BLAST of EY675353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CB24_ARATH1.997e-5277.36Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA7.518e-5281.90Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB120_HORVU3.955e-3069.23Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB12_PETHY2.405e-2246.15Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC7.356e-2147.73Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB4B_SOLLC6.771e-1342.20Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4A_SOLLC3.360e-1240.74Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4_SPIOL2.178e-1155.17Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB11_SOLLC2.178e-1144.87Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-009-D11-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675353 ID=EY675353; Name=EY675353; organism=Citrus sinensis; type=EST; length=965bp
CCACGCGTCCGCCCACGCGTCCGCTCCTGCACCATTAGGCTCATAACTCT
CGTCGGGAAACATGGCAACCCCCACAACACAAGCCTCGGCCGCTGTGTTC
CGGCCATGCGCATCCAAATCCAGGTTCCTTACTGGGTCTTCGGGTACATT
AAATAGGGAAGTGGCCTTGAAACCAGTGAGCTCAAGCGCTTCTTTCAAAG
TTGAAGCCAAGGGGGAGTGGTTACCGGGCTTGGCCTCGCCAACTTACCTC
AACGGCAGCCTCCCCGGTGACAATGGATTTGACCCCTTGGGGCTTGCCGA
GGATCCTGAGAACTTGAAGTGGTATGTGCAAGCCGAGCTTGTGAATTCGC
GCTGGGCCATGTTGGGGTGTTGTTGAGATGTTGTTGCCCGAAGTTTTCAC
AAAGATTGGAATTAATAATGTTCCTCCATGGGAGGAGGCTGGGAAAGCCT
AATACTTTGCATCATCTACGACCCCTTTTCGTAATCCAATTCATTCTTGT
TTCCACTATGTGGAAAAAAAAAAAATGGCAGGAAATAAAGAAACCGGGAA
GGTGCAACCCAGAACCCACTTTTCAACAAAACAACTTTGCCTCCAAACGA
AATTGGGGAACCCCGGTAGACGTCCTCAAAAAAAGAAAAAACTTTTCCCC
CACCTGAAAAAGGATAAAAGAAAAAGGGAGCTTGTCAAAGGGGAGAATGT
GAAAAGATAGGAACATTTGAGGGAATTAATTTTCCAACAAAAGGTGAAAA
GGGGAAAGAGGCGCTTTTTATCAAACTTCCCTGCAACAATTATCTACTGA
CACGATGGGGAAAACAACCACACCTGCTGGGAAAGAATAGGTGACTAAAT
CAGAGATAAAAAAAAAAGGAGATAGAGGACAATCCAGGGCGAAGAACAAG
ATCACATCAGATTCTTAAGAACAACCTAAACGAGATAGAATAAATAGATT
TATGGAAATAAAGAA
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