EY675316

Overview
NameEY675316
Unique NameEY675316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1042
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675316 vs. ExPASy Swiss-Prot
Match: XYLF_HAEIN (D-xylose-binding periplasmic protein OS=Haemophilus influenzae GN=xylF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.613e-31
Identity = 66/113 (58.41%), Postives = 88/113 (77.88%), Query Frame = -2
Query:    1 IGFSIDDLRVERWTRDRNYFVEAATALGAKVNVQSANASESRQIAQVENLIAEGVDALVIVPFNSKVLGSAIAKAHRNGIKVIAYDRLILGAPLDGYVSFDNMEVGEMQAQGM 339
            IG SIDDLR+ERW +DR+ FV  A ++GAKV VQSAN  +S QI+Q+EN+I + +D LVI+P N +VL + I++A + GIKV+AYDRLI  A LD YVSFDN +VGE+QA+ +
Sbjct:   28 IGLSIDDLRLERWQKDRDIFVNKAESMGAKVFVQSANGDDSAQISQIENMINKNIDVLVIIPHNGEVLSNVISEAKKEGIKVLAYDRLINNADLDFYVSFDNEKVGELQAKSI 140          
BLAST of EY675316 vs. ExPASy Swiss-Prot
Match: XYLF_ECOLI (D-xylose-binding periplasmic protein OS=Escherichia coli (strain K12) GN=xylF PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 6.163e-31
Identity = 63/113 (55.75%), Postives = 89/113 (78.76%), Query Frame = -2
Query:    1 IGFSIDDLRVERWTRDRNYFVEAATALGAKVNVQSANASESRQIAQVENLIAEGVDALVIVPFNSKVLGSAIAKAHRNGIKVIAYDRLILGAPLDGYVSFDNMEVGEMQAQGM 339
            IG +IDDLR+ERW +DR+ FV+ A +LGAKV VQSAN +E  Q++Q+EN+I  GVD LVI+P+N +VL + + +A + GIKV+AYDR+I  A +D Y+SFDN +VGE+QA+ +
Sbjct:   28 IGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKAL 140          
BLAST of EY675316 vs. ExPASy Swiss-Prot
Match: SBPA_AZOBR (Multiple sugar-binding periplasmic protein sbpA OS=Azospirillum brasilense GN=sbpA PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.168e-13
Identity = 42/115 (36.52%), Postives = 63/115 (54.78%), Query Frame = -2
Query:   13 KDAPVIGFSIDDLRVERWTRDRNYFVEAATALGAKVNVQSANASESRQIAQVENLIAEGVDALVIVPFNSKVLGSAIAKAHRNGIKVIAYDRLILGAP-LDGYVSFDNMEVGEMQ 354
            +D P +G ++      RW  D N  V+   A G K ++Q A      Q+AQ+E ++A+    LVI   +   L   + +A   G+KVIAYDRLI G+  +D Y +FDN +VG +Q
Sbjct:   29 QDKPTVGIAMPTKSSARWIDDGNNMVKQFQAKGYKTDLQYAEDDIPNQLAQIETMVAKNSKVLVIAAIDGTTLTDVLQQAKDRGVKVIAYDRLIRGSENVDYYATFDNFQVGVLQ 143          
BLAST of EY675316 vs. ExPASy Swiss-Prot
Match: CHVE_RHIRD (Multiple sugar-binding periplasmic receptor chvE OS=Rhizobium radiobacter GN=chvE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.992e-13
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = -2
Query:    1 DAPVIGFSIDDLRVERWTRDRNYFVEAATALGAKVNVQSANASESRQIAQVENLIAEGVDALVIVPFNSKVLGSAIAKAHRNGIKVIAYDRLILGA-PLDGYVSFDNMEVGEMQAQGM 351
            D   +G ++      RW  D N  V+   A G   ++Q  +     Q++QVEN++ +G   LVI   +   L   + KAH  GIKVIAYDRLI  +  +D Y +FDN +VG +QA  +
Sbjct:   26 DKGTVGIAMPTKASARWIDDGNNIVKQLQAAGYGTDLQYGDDDIPNQLSQVENMVTKGDKVLVIAAIDGTTLSDVLQKAHDAGIKVIAYDRLIRNSGNVDYYATFDNFKVGVLQANSI 143          
BLAST of EY675316 vs. ExPASy Swiss-Prot
Match: CHVE_AGRT5 (Multiple sugar-binding periplasmic receptor chvE OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=chvE PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 5.795e-13
Identity = 41/116 (35.34%), Postives = 63/116 (54.31%), Query Frame = -2
Query:   10 KDAPVIGFSIDDLRVERWTRDRNYFVEAATALGAKVNVQSANASESRQIAQVENLIAEGVDALVIVPFNSKVLGSAIAKAHRNGIKVIAYDRLILGA-PLDGYVSFDNMEVGEMQA 354
            +D   +G ++      RW  D N  V+     G K ++Q A+     Q++Q+EN++ +GV  LVI   +   L   + +A   GIKVIAYDRLI  +  +  Y +FDN +VG +QA
Sbjct:   25 QDKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIRNSGDVSYYATFDNFQVGVLQA 140          
The following BLAST results are available for this feature:
BLAST of EY675316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
XYLF_HAEIN3.613e-3158.41D-xylose-binding periplasmic protein OS=Haemophilu... [more]
XYLF_ECOLI6.163e-3155.75D-xylose-binding periplasmic protein OS=Escherichi... [more]
SBPA_AZOBR1.168e-1336.52Multiple sugar-binding periplasmic protein sbpA OS... [more]
CHVE_RHIRD1.992e-1336.44Multiple sugar-binding periplasmic receptor chvE O... [more]
CHVE_AGRT55.795e-1335.34Multiple sugar-binding periplasmic receptor chvE O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-009-A04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675316 ID=EY675316; Name=EY675316; organism=Citrus sinensis; type=EST; length=1042bp
CATGCCCTGGGCCTGCATTTCGCCCACCTCCATGTTGTCGAACGACACGT
AGCCGTCCAGCGGCGCGCCGAGGATCAGCCGGTCGTAGGCGATGACCTTG
ATGCCGTTGCGGTGCGCCTTGGCGATGGCGCTGCCCAGCACCTTGGAATT
GAACGGCACGATGACCAGGGCATCGACGCCTTCGGCGATCAGGTTCTCGA
CCTGGGCGATCTGGCGCGATTCGCTGGCGTTGGCCGATTGCACGTTGACC
TTGGCGCCCAGGGCGGTCGCGGCCTCGACGAAATAGTTGCGGTCGCGGGT
CCAGCGCTCGACCCGCAGGTCGTCGATGGAAAAGCCGATCACGGGCGCGT
CCTTGCTGGCGTGGGCGGCGGGGCTGGCGAGCAGGACCGCGGGCAGGGCC
AGCGCGCAGGCCAGCAGGCGGCGCAAGAATGGGGTCATGTCAGTCTCCTA
GTGGCGCTTCGCGCTCAAAAAGTGATACCGGTCTTCAAGCCTACGAAGAA
AGCGTCGTGGTTGGCGCTGGTGCCCGCCGGATGCCTGAAGTACTGGCAAA
ATGGGGGCGCAGGAGATGGGAGGGAACCGGGCGACCCGCCTTGTATTACC
CCCTCGGCCCACCTAATTTCCAAACCCTTCCCCCCCACCTTGGGGGCCTG
GGGGGCCCCAGGCCCCTGGTCCCGGCTGGGGGCACGTTATTCCGGGGTAT
TACGGCCTGTTTGTGGTGGGGTGCCGGCCCTATTTCCCCCACGCCATATA
ATTTCTCCCCCCCACAGTCGCAAAAAGGGCCCTTTTTTAAAGGGGAACCC
CCAAAACGCCGTTTTTGGGGGAATTCCTTGGCGCCGGACGGTGATGGGAA
GTGAACGGGCCTTTTCCAATCTTTTATTAAGAAAATATCGGGCTGGGAGC
CCGCGAACACCCCGCTATGGTAAAATAATCAAAATATTATTTAAACTCGA
TNTGATGGTTGAAGGAAGAAATGACTGATAGACACACTTCTTTATTGTAG
AGAGAAGGGGTCGAGCACCAAGTGAAAAATAAATAAGTTATT
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