EY675315

Overview
NameEY675315
Unique NameEY675315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length965
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675315 vs. ExPASy Swiss-Prot
Match: MCM9_XENLA (DNA replication licensing factor MCM9 OS=Xenopus laevis GN=mcm9 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.360e-12
Identity = 46/141 (32.62%), Postives = 74/141 (52.48%), Query Frame = 2
Query:  299 IWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQGMYVYYCLFFQ*EFYFISLEIKSIAVAAHAKLMVRNEITRLNAITAILCFESSLNSLSPYGIRVG--TPLHLNFPWKSRD 715
            +W +  ++ Y   +K   +P ++++A  ++  YYQLQR+S+ +NAARTT+R+LESLIRLA+                           AHA++M R+ +T  +AIT +   ESS+      G  +G    LH +FP   R+
Sbjct:  519 LWSMEKMKTYFCLIKN-LQPKMSQDANVILVRYYQLQRQSSCRNAARTTIRLLESLIRLAE---------------------------AHARIMYRDVVTTEDAITVVSIMESSMQG----GALLGGVNALHTSFPENPRE 627          
BLAST of EY675315 vs. ExPASy Swiss-Prot
Match: MCM9_MOUSE (DNA replication licensing factor MCM9 OS=Mus musculus GN=Mcm9 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 7.486e-12
Identity = 46/141 (32.62%), Postives = 74/141 (52.48%), Query Frame = 2
Query:  296 DIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQGMYVYYCLFFQ*EFYFISLEIKSIAVAAHAKLMVRNEITRLNAITAILCFESSLNSLSPYGIRVG--TPLHLNFPWKSR 712
            ++W +  ++ Y   ++    P L++ + +V+  YYQ+QR+S ++NAARTT+R+LESLIRLA+                           AHA+LM R+ +T  +A+TA+   ESS+      G  +G    LH +FP   R
Sbjct:  517 NLWSMEKMKTYFCLIRN-LHPTLSEVSNQVLLRYYQMQRQSDSRNAARTTIRLLESLIRLAE---------------------------AHARLMFRSAVTLEDAVTAVSVMESSMQG----GALLGGVNALHTSFPENPR 625          
BLAST of EY675315 vs. ExPASy Swiss-Prot
Match: MCM9_HUMAN (DNA replication licensing factor MCM9 OS=Homo sapiens GN=MCM9 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 6.338e-11
Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = 2
Query:  299 IWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQGMYVYYCLFFQ*EFYFISLEIKSIAVAAHAKLMVRNEITRLNAITAILCFESSLNSLSPYGIRVG--TPLHLNFP 700
            +W +  ++ Y   ++   +P L+    +V+  YYQ+QR+S  +NAARTT+R+LESLIRLA+                           AHA+LM R+ +T  +AIT +   ESS+      G  +G    LH +FP
Sbjct:  518 LWSMEKMKTYFCLIRN-LQPTLSDVGNQVLLRYYQMQRQSDCRNAARTTIRLLESLIRLAE---------------------------AHARLMFRDTVTLEDAITVVSVMESSMQG----GALLGGVNALHTSFP 621          
BLAST of EY675315 vs. ExPASy Swiss-Prot
Match: MCM8_HUMAN (DNA replication licensing factor MCM8 OS=Homo sapiens GN=MCM8 PE=1 SV=2)

HSP 1 Score: 47.3654 bits (111), Expect = 8.079e-11
Identity = 29/76 (38.16%), Postives = 45/76 (59.21%), Query Frame = 2
Query:  263 LSEEKDTEPLTDIWPLA--MLRRYIYFVKGYFKPILTKEAEKVISSYY-QLQRRSATQNAARTTVRMLESLIRLAQ 481
            LSE     P   I P+   +LR+YI + + Y  P L+ EA +V+  +Y +L+++S   N++  T R LESLIRL +
Sbjct:  646 LSERLKVVPGETIDPIPHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQSQRLNSSPITTRQLESLIRLTE 721          

HSP 2 Score: 40.817 bits (94), Expect = 8.079e-11
Identity = 18/39 (46.15%), Postives = 26/39 (66.67%), Query Frame = 3
Query:   54 LSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILA 170
            +S N  +   LLSRFD+V +LLDT N   D ++S H++A
Sbjct:  573 VSENLKMGSALLSRFDLVFILLDTPNEHHDHLLSEHVIA 611          
The following BLAST results are available for this feature:
BLAST of EY675315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
MCM9_XENLA3.360e-1232.62DNA replication licensing factor MCM9 OS=Xenopus l... [more]
MCM9_MOUSE7.486e-1232.62DNA replication licensing factor MCM9 OS=Mus muscu... [more]
MCM9_HUMAN6.338e-1133.09DNA replication licensing factor MCM9 OS=Homo sapi... [more]
MCM8_HUMAN8.079e-1138.16DNA replication licensing factor MCM8 OS=Homo sapi... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-009-A03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675315 ID=EY675315; Name=EY675315; organism=Citrus sinensis; type=EST; length=965bp
CTTTATTATTTCTTATACATTCCGGGTTGCAATATTCTTAACCTCTTCTA
GCCCTCTCTGTCAATACAACACTTTCTGGTCCCTTATTGAGCAGATTTGA
TATAGTTCTTGTCCTCCTGGACACTAAAAATCCTGAATGGGATGCTGTTG
TATCATCTCACATTCTTGCTGAGGTAAAGTAAGCTTTAATTATGGATTTA
GAATCATAAAGGACTTGAAAATTTGTAAATATTGGCTTCTTCTGAACTAA
TGTCAGGGAGGACTTAGCGAAGAGAAGGACACTGAACCTCTAACAGATAT
CTGGCCATTAGCAATGCTTCGCAGGTACATTTACTTCGTAAAAGGATACT
TCAAACCGATCCTTACGAAGGAGGCTGAAAAAGTAATCTCAAGCTATTAT
CAACTCCAAAGAAGATCTGCGACCCAGAATGCAGCCAGGACAACCGTGCG
GATGTTAGAAAGTTTGATACGCCTAGCTCAAGGTATGTACGTTTACTATT
GCTTATTCTTCCAATGAGAATTCTACTTTATCTCATTGGAGATTAAATCT
ATTGCTGTTGCAGCTCATGCAAAACTAATGGTCAGAAATGAAATTACTCG
ATTAAACGCCATTACTGCAATTTTATGCTTTGAATCATCCCTGAACTCCC
TCAGCCCATATGGAATAAGGGTGGGGACCCCCCTGCATTTAAATTTTCCC
TGGAAATCCCGGGATTTAAAAAAGTTCCCTTTTTTTTCTTTAAACCCCCA
TTGGGAAATTTTTGCCTGTCCATTTTGGGCCAACAAAAATTTAAAAATTT
AAATTATTCGGTGCTCTCCTGCCACAATATTTTAAAAACCTTTTCGGAAA
TATTCTAAAAAAAAAGGGGCACAAAAAAAAAAAGGAGAAAATTTTTTTCG
CGAAAATTAAAAAATTTTTTAAGGGGGGGAAAATTTTTTTTTACCCGGGA
GGATTTTTTTTTCCC
back to top