EY656888

Overview
NameEY656888
Unique NameEY656888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY656888 vs. ExPASy Swiss-Prot
Match: PRP31_XENLA (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus laevis GN=prpf31 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.102e-11
Identity = 41/117 (35.04%), Postives = 65/117 (55.56%), Query Frame = 2 
Query:  140 TLADSFLADLEELSDNEADVNEEEGGVDATNMXXXXXXXXXXXXALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIPNFL 490
            +LAD  LADLEE ++ E     EE  +D  ++             LN + + +++KL  S+ F++I+ K+E  +Q     S     +E  PEY++IVD N L+V+IENE+ II  F+
Sbjct:    2 SLADELLADLEEAAEEE-----EENLIDEDDLETIEEVDEEMQVDLNAESVKSIAKLSDSKLFSEILLKIEGYIQKQPKASEVMGPVEAAPEYKVIVDANNLTVEIENELNIIHKFI 113

HSP 2 Score: 23.0978 bits (48), Expect = 1.102e-11
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 3 
Query:  492 RDKYQLKFPKLGIFIPS 542
            RDKY  +FP+L   +P+
Sbjct:  114 RDKYSKRFPELESLVPN 130
[Close]
BLAST of EY656888 vs. ExPASy Swiss-Prot
Match: PRP31_XENTR (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus tropicalis GN=prpf31 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 6.842e-11
Identity = 39/117 (33.33%), Postives = 65/117 (55.56%), Query Frame = 2 
Query:  140 TLADSFLADLEELSDNEADVNEEEGGVDATNMXXXXXXXXXXXXALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIPNFL 490
            +LAD  LADLEE ++ E     EE  +D  ++             LN + + +++KL  S+ F++I+ K++  ++     S     +E  PEY++IVD N L+V+IENE+ II  F+
Sbjct:    2 SLADELLADLEEAAEEE-----EENLIDEDDLETIEEVQEEMQVDLNAESVKSIAKLSDSKLFSEILLKIDGYIKKQPKASEVMGPVEAAPEYKVIVDANNLTVEIENELNIIHKFI 113

HSP 2 Score: 23.0978 bits (48), Expect = 6.842e-11
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 3 
Query:  492 RDKYQLKFPKLGIFIPS 542
            RDKY  +FP+L   +P+
Sbjct:  114 RDKYSKRFPELESLVPN 130
The following BLAST results are available for this feature:
BLAST of EY656888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PRP31_XENLA1.102e-1135.04U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xen... [more]
PRP31_XENTR6.842e-1133.33U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xen... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-087-F11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY656888 ID=EY656888; Name=EY656888; organism=Citrus sinensis; type=EST; length=872bp
CACGCGTCCGCCCTTTGCCGCCACGGTGCTGTGCATCAGTCGGTCCCCGT
CCGCACGTTAGGCTATTAATCAATCACTCGGAGCAAACCCTAGGACAGGA
TTTAATCGTTTTCCTTCCCTCAAACTCGAGACCATGGCAACTCTTGCTGA
TTCCTTCCTCGCTGACCTGGAAGAGTTATCTGACAACGAAGCTGATGTTA
ATGAAGAGGAAGGAGGAGTTGATGCCACAAACATGGAAGAAGATATTGAC
GGTGACATTGAAGATATAGAAGCTCTGAACTATGATGACTTGGACAATGT
TTCAAAATTGCAGAAATCTCAGAGATTCACTGATATAATGCAGAAAGTTG
AAGCTGCACTCCAGAACGGTTCTGATATATCTAATCATGGAATGGTATTG
GAGGATGATCCAGAGTATCAGCTAATTGTCGATTGTAATGTATTATCAGT
TGACATAGAGAATGAGATTGTGATTATTCCTAATTTCCTTTCGCGACAAG
TACCAACTGAAATTTCCGAAGCTTGGAATCTTTATTCCATCACCCCATTG
GATATGCCCCGGGTTGGTGAAAAAAAATCGGCACCAAAATGGGACTTTGA
CCCTGGGGGAATCTGGGAGGGGCTTTTTCCCCCCCACCCTTTTTCATGGG
GGGGTGTTCCGTCCCAACCATCAAATAACAAAATGGGAAAAACCCCTTCC
CCAAAAAAATGTCCTTTCCAAAAAAAAAAATTGTGGGCCCTGGGGGATCA
ACCCTCTTGCCCTCTTTTTGGCCACACAAAAAAAAAAAAAGGGGCCCTGT
GGATTTTTTGTAAAAAAAAACAAGGGGGGAGAAAACCTTTTTTTGGGCGC
CCCCCAACTTCTTTTTCTGCCA
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