EY675269

Overview
NameEY675269
Unique NameEY675269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13594 contig Csv1_Contig13594:566..1188. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY675269 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.102e-29
Identity = 73/116 (62.93%), Postives = 83/116 (71.55%), Query Frame = 3
Query:   57 AKPYFSDKRKLFRIMDTKLGGQYPQKAAHTAATLALQCLNNEPKLRPRMSEVLAILERLEA-PKNSAKLSQSEPHRQTGPVTVRKSPMR--QQRSPLNMTPTASPLPSHRQSPRVR 395
            A PY  DKRKLFRIMDTKLGGQYPQK A TAA LALQCLN + KLRP+MSEVL  LE+LE+  K   K +Q E  R      ++KSP+R    R  L+MTP ASPLPS+ QSPRVR
Sbjct:  311 ATPYLGDKRKLFRIMDTKLGGQYPQKGAFTAANLALQCLNPDAKLRPKMSEVLVTLEQLESVAKPGTKHTQMESPRFHHSSVMQKSPVRYSHDRPLLHMTPGASPLPSYTQSPRVR 426          
BLAST of EY675269 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.205e-29
Identity = 74/137 (54.01%), Postives = 93/137 (67.88%), Query Frame = 3
Query:    3 RCAVHKKKLVLSRV**TAAKPYFSDKRKLFRIMDTKLGGQYPQKAAHTAATLALQCLNNEPKLRPRMSEVLAILERLEAPKNSA----KLSQSEPHRQTGPVTVRKSPMR--QQRSPLNMTPTASPLPSHRQSPRVR 395
            R AV K K+ + +     A PY  DKRKLFRIMDT+LGGQYPQK A+TAA+LALQCLN + KLRP+MSEVLA L++LE+ K       + +Q +  R +    V+KSP R    R  L++TP ASPLP+H  SPRVR
Sbjct:  290 RRAVDKSKVGMEQSLVDWATPYLGDKRKLFRIMDTRLGGQYPQKGAYTAASLALQCLNPDAKLRPKMSEVLAKLDQLESTKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLHITPGASPLPTHNHSPRVR 426          
BLAST of EY675269 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.308e-11
Identity = 41/111 (36.94%), Postives = 64/111 (57.66%), Query Frame = 3
Query:   57 AKPYFSDKRKLFRIMDTKLGGQYPQKAAHTAATLALQCLNNEPKLRPRMSEVLAILERL----EAPKNSAKLSQSEPHRQTGPVTVRKSPMR--QQRSPLNMTPTASPLPS 371
            A+P  ++KRKLFR++D +L  QY  + A   ATLAL+CL  E KLRP M+EV++ LE +    EA   +  + Q    R++  V + + P     +++ + +  TA P PS
Sbjct:  296 ARPLLANKRKLFRVIDNRLQDQYSMEEACKVATLALRCLTFEIKLRPNMNEVVSHLEHIQTLNEAGGRNIDMVQRRMRRRSDSVAINQKPNAGFARQTAVGVIATAYPRPS 406          
BLAST of EY675269 vs. ExPASy Swiss-Prot
Match: APK1A_ARATH (Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 3
Query:   57 AKPYFSDKRKLFRIMDTKLGGQYPQKAAHTAATLALQCLNNEPKLRPRMSEVLAILERLEAPK-----NSAKLSQSEPHRQTGPVTVRKSPMRQQRSPLNMTPTASPLPS 371
            AKPY  +KRK+FR++D +L  QY  + A   ATL+L+CL  E KLRP MSEV++ LE +++       N  K  +    R    V+ + +    +++ +  T  A P PS
Sbjct:  295 AKPYLVNKRKIFRVIDNRLQDQYSMEEACKVATLSLRCLTTEIKLRPNMSEVVSHLEHIQSLNAAIGGNMDKTDRRMRRRSDSVVSKKVNAGFARQTAVGSTVVAYPRPS 404          
The following BLAST results are available for this feature:
BLAST of EY675269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
APK2A_ARATH1.102e-2962.93Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
APK2B_ARATH3.205e-2954.01Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
APK1B_ARATH2.308e-1136.94Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
APK1A_ARATH3.937e-1136.36Protein kinase APK1A, chloroplastic OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-008-D09-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675269 ID=EY675269; Name=EY675269; organism=Citrus sinensis; type=EST; length=625bp
GGCGATGTGCTGTCCATAAAAAAAAGTTGGTATTGAGCAGAGTCTAGTAG
ACTGCCGCAAAACCATATTTCTCTGACAAAAGGAAATTATTTCGCATCAT
GGACACCAAGTTGGGAGGCCAGTACCCCCAGAAAGCAGCCCATACAGCTG
CTACCCTTGCCTTACAGTGCTTAAATAACGAACCTAAACTTAGGCCTCGG
ATGTCTGAGGTTTTAGCAATACTAGAGCGACTTGAAGCCCCCAAAAATTC
AGCCAAACTCTCCCAGTCTGAACCACATAGGCAGACTGGCCCAGTTACAG
TACGCAAGTCACCAATGAGGCAGCAGCGTTCTCCACTGAATATGACACCA
ACTGCATCGCCATTGCCATCACACCGGCAATCTCCACGAGTAAGATGAAC
CGAGAAGCATCTTTTTTTGTAAATTTCTTAAATGCCTTCTTGCCAGTTGT
CAAAATAACTATTGTATGGATGTGTCTTCTGATGCTGTTTTGAGTGAATA
GTACTGAAGATTGTCATAGGCCTTTTTGTTTCTTGATGATAAGTTGTTTT
CCTGCTGTAAATGTATCAATAGCCCAAATATAAATGTTTCCTTTTGCTGC
CGTTACAAAAAAAAAAAAAAAGGGC
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