EY656880

Overview
NameEY656880
Unique NameEY656880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length950
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY656880 vs. ExPASy Swiss-Prot
Match: PAO_ARATH (Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=PAO PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.790e-26
Identity = 61/150 (40.67%), Postives = 82/150 (54.67%), Query Frame = 1 
Query:  187 SPSSQVSTEATDPPERELETNSQEEK----FDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGKLQCVYHGWCFSGSGDWKFIXXXXXXXXXXXTFK--KACAAVYPVTVHHDFVRVW 618
            +P S  ++++T+    E E    +E+    F W   WYP+  V DLD  VP   ++LG D+V+W+DRN+ +W  F D CPHRLAPLSEGR+D+ G LQC YHGW F G G    I             K  +ACA  +P  V    + VW
Sbjct:   52 APPSVPTSDSTEEKRIEEEYGGDKEEEGSEFKWRDHWYPVSLVEDLDPNVPTPFQLLGRDLVLWFDRNDQKWAAFDDLCPHRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIPQAATSGPEARAVKSPRACAIKFPTMVSQGLLFVW 201
The following BLAST results are available for this feature:
BLAST of EY656880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PAO_ARATH1.790e-2640.67Pheophorbide a oxygenase, chloroplastic OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-087-F03-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY656880 ID=EY656880; Name=EY656880; organism=Citrus sinensis; type=EST; length=950bp
ACGGTGCTGCATGCAGCCATGGAAGCTCTTAGACTCTCCTCGGTTTCACC
TTTTTGTAACGCTACATTCAAACTTGAGTACAATAAGACCCACTTCACTA
AGCCCAAGTTCTTAAGCTTTCAGTTCAGTTCCCTGTCCACTTTATCATCT
TTCTCATCAAAACCATACAAAATCTTCACCACCTTATCACCATCGTCACA
AGTTTCAACTGAAGCCACAGACCCACCAGAAAGAGAGCTTGAAACTAACT
CACAAGAGGAGAAATTTGATTGGTTCTCACAGTGGTATCCATTGATGCCG
GTGTGTGATTTGGACAAGAGAGTCCCTCATGCAAAGAAAGTGTTGGGGCT
TGATGTCGTGGTTTGGTGGGACAGGAATGAGAATGAATGGAGAGTCTTTG
CTGATGCTTGTCCTCACAGATTGGCTCCTTTGTCAGAAGGAAGAATTGAT
CAATGGGGGAAGCTTCAGTGTGTGTATCATGGCTGGTGCTTCAGTGGCTC
GGGTGACTGGAAATTTATCCCTCAGGGTCCCCCAGACGGGCCCCCCGGCC
CAACCTTCAAGAAAGCATGTGCGGCAGTTTACCCAGTTACCGTCCACCAT
GACTTCGTAAGGGTTTGGGCCAAATATTGGTCCTCGGGTAAAGGGATATT
ATCAAGAACAAAAAAACCCCCCCCCCTTCCCGGAAAAAGAAGACCCGCCC
TTCCAAAAATTTGGTTGGGAAAAAAAAAAAAAAACCTTAGGGGTTAGGGG
GTCTTTTTTGGAAAAAAATCTTATGGGACCCCGGGCCAAGGGTCCCCAAT
GGCCCCATATACGGGAGTGGGGGGGGTAACAAAGGAGAAACCCAAGTGGG
AAACCCCCTGTAAAAAAAAGGGGGGGAAAAAAACCAGTTTGAAAAAAAGA
GTGGGGTCAAAAAAAAAAAAAAAAAATAAAAAAAGGGGGTTTTTCTTTTG
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