EY675228

Overview
NameEY675228
Unique NameEY675228
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1038
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY675228 vs. ExPASy Swiss-Prot
Match: HUTH_PSEFS (Histidine ammonia-lyase OS=Pseudomonas fluorescens (strain SBW25) GN=hutH PE=3 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 2.020e-50
Identity = 99/106 (93.40%), Postives = 101/106 (95.28%), Query Frame = 2 
Query:   26 VDSLPTSANQEHHVSMAPAAGKRLWEMAENTRGVLAVEWLAACQGLDLRNGLKTSPALEKARGILRSKVAFYEKDRFFAPDINAASELLATRCLNELVPAKLLPSL 343
            VDSLPTSANQE HVSMAPAAGKRLWEMAENTRG+LAVEWLAACQGLDLR GLKTSP LEKARGILR KVAFY+KDRFFAPDINAASELLATRCLNELVPA LLPSL
Sbjct:  407 VDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGILAVEWLAACQGLDLREGLKTSPKLEKARGILRDKVAFYDKDRFFAPDINAASELLATRCLNELVPANLLPSL 512
[Close]
BLAST of EY675228 vs. ExPASy Swiss-Prot
Match: HUTH_PSEPF (Histidine ammonia-lyase OS=Pseudomonas fluorescens (strain Pf0-1) GN=hutH PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.147e-45
Identity = 93/106 (87.74%), Postives = 98/106 (92.45%), Query Frame = 2 
Query:   26 VDSLPTSANQEHHVSMAPAAGKRLWEMAENTRGVLAVEWLAACQGLDLRNGLKTSPALEKARGILRSKVAFYEKDRFFAPDINAASELLATRCLNELVPAKLLPSL 343
            VDSLPTSANQE HVSMAPAAGKRLWEMAENTRG+LAVEWLAA QGLDLRNGLKTS  LE+ARGILR +V FYEKDRFFAPDINAA+ELLA+R L ELVPAKLLPSL
Sbjct:  405 VDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGILAVEWLAAVQGLDLRNGLKTSAKLEQARGILRREVPFYEKDRFFAPDINAATELLASRILTELVPAKLLPSL 510
[Close]
BLAST of EY675228 vs. ExPASy Swiss-Prot
Match: HUTH_PSESM (Histidine ammonia-lyase OS=Pseudomonas syringae pv. tomato GN=hutH PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 9.708e-45
Identity = 89/106 (83.96%), Postives = 96/106 (90.57%), Query Frame = 2 
Query:   26 VDSLPTSANQEHHVSMAPAAGKRLWEMAENTRGVLAVEWLAACQGLDLRNGLKTSPALEKARGILRSKVAFYEKDRFFAPDINAASELLATRCLNELVPAKLLPSL 343
            VDSLPTSANQE HVSMAPAAGKRLWEMAEN RG+LAVEWLAACQGLDLR GLKTS  LE+AR +LRSKV FYEKDRFFAPDI AAS+LL++ CLN LVPA+LLPSL
Sbjct:  410 VDSLPTSANQEDHVSMAPAAGKRLWEMAENVRGILAVEWLAACQGLDLREGLKTSAKLEQARSLLRSKVPFYEKDRFFAPDIEAASQLLSSTCLNPLVPARLLPSL 515
[Close]
BLAST of EY675228 vs. ExPASy Swiss-Prot
Match: HUTH_YERE8 (Histidine ammonia-lyase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=hutH PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 3.453e-42
Identity = 86/108 (79.63%), Postives = 94/108 (87.04%), Query Frame = 2 
Query:   20 SRVDSLPTSANQEHHVSMAPAAGKRLWEMAENTRGVLAVEWLAACQGLDLRNGLKTSPALEKARGILRSKVAFYEKDRFFAPDINAASELLATRCLNELVPAKLLPSL 343
            S VDS+PTSANQE HVSMAP AGKRLWEMAEN RG+LAVEWLAACQGLDLR GLKTS ALE AR +LR  VA+YEKDRFFAPDI AAS+L+A R +NEL+PA LLPSL
Sbjct:  400 SSVDSIPTSANQEDHVSMAPRAGKRLWEMAENVRGILAVEWLAACQGLDLRKGLKTSDALEPARLLLRKHVAYYEKDRFFAPDIEAASQLIALRHMNELMPAHLLPSL 507
[Close]
BLAST of EY675228 vs. ExPASy Swiss-Prot
Match: HUTH_PSEAE (Histidine ammonia-lyase OS=Pseudomonas aeruginosa GN=hutH PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 6.512e-41
Identity = 81/106 (76.42%), Postives = 92/106 (86.79%), Query Frame = 2 
Query:   26 VDSLPTSANQEHHVSMAPAAGKRLWEMAENTRGVLAVEWLAACQGLDLRNGLKTSPALEKARGILRSKVAFYEKDRFFAPDINAASELLATRCLNELVPAKLLPSL 343
            VDSLPTSANQE HVSMAP AGKRLW MAEN RG+LAVEWL ACQGLD R GLK+SP LE+AR +LR KV +Y++DRFFAPDI AAS+LLA+ CLN L+PA+LLPSL
Sbjct:  404 VDSLPTSANQEDHVSMAPNAGKRLWAMAENVRGILAVEWLGACQGLDFREGLKSSPKLEQARRLLRDKVPYYQEDRFFAPDIEAASQLLASGCLNALLPARLLPSL 509
[Close]
BLAST of EY675228 vs. ExPASy Swiss-Prot
Match: HUTH_PSEAB (Histidine ammonia-lyase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=hutH PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 6.512e-41
Identity = 81/106 (76.42%), Postives = 92/106 (86.79%), Query Frame = 2 
Query:   26 VDSLPTSANQEHHVSMAPAAGKRLWEMAENTRGVLAVEWLAACQGLDLRNGLKTSPALEKARGILRSKVAFYEKDRFFAPDINAASELLATRCLNELVPAKLLPSL 343
            VDSLPTSANQE HVSMAP AGKRLW MAEN RG+LAVEWL ACQGLD R GLK+SP LE+AR +LR KV +Y++DRFFAPDI AAS+LLA+ CLN L+PA+LLPSL
Sbjct:  404 VDSLPTSANQEDHVSMAPNAGKRLWAMAENVRGILAVEWLGACQGLDFREGLKSSPKLEQARRLLRDKVPYYQEDRFFAPDIEAASQLLASGCLNALLPARLLPSL 509
[Close]
BLAST of EY675228 vs. ExPASy Swiss-Prot
Match: HUTH_PSEA8 (Histidine ammonia-lyase OS=Pseudomonas aeruginosa (strain LESB58) GN=hutH PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 6.512e-41
Identity = 81/106 (76.42%), Postives = 92/106 (86.79%), Query Frame = 2 
Query:   26 VDSLPTSANQEHHVSMAPAAGKRLWEMAENTRGVLAVEWLAACQGLDLRNGLKTSPALEKARGILRSKVAFYEKDRFFAPDINAASELLATRCLNELVPAKLLPSL 343
            VDSLPTSANQE HVSMAP AGKRLW MAEN RG+LAVEWL ACQGLD R GLK+SP LE+AR +LR KV +Y++DRFFAPDI AAS+LLA+ CLN L+PA+LLPSL
Sbjct:  404 VDSLPTSANQEDHVSMAPNAGKRLWAMAENVRGILAVEWLGACQGLDFREGLKSSPKLEQARRLLRDKVPYYQEDRFFAPDIEAASQLLASGCLNALLPARLLPSL 509
[Close]
BLAST of EY675228 vs. ExPASy Swiss-Prot
Match: HUTH_YERPS (Histidine ammonia-lyase OS=Yersinia pseudotuberculosis GN=hutH PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 9.403e-40
Identity = 79/106 (74.53%), Postives = 90/106 (84.91%), Query Frame = 2 
Query:   26 VDSLPTSANQEHHVSMAPAAGKRLWEMAENTRGVLAVEWLAACQGLDLRNGLKTSPALEKARGILRSKVAFYEKDRFFAPDINAASELLATRCLNELVPAKLLPSL 343
            VDS+PTSANQE HVSMAP AGKRLWEMAEN R +LA+EWLAACQGLDLR GL+TS  LE AR +LR  V +Y+KDRFFAPDI  AS+L+A R +NEL+PAKLLPSL
Sbjct:  405 VDSIPTSANQEDHVSMAPRAGKRLWEMAENVRNILAIEWLAACQGLDLRKGLRTSAILEPARQLLRQHVTYYDKDRFFAPDIEVASQLIAQRHMNELMPAKLLPSL 510
[Close]
BLAST of EY675228 vs. ExPASy Swiss-Prot
Match: HUTH_YERPE (Histidine ammonia-lyase OS=Yersinia pestis GN=hutH PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 9.403e-40
Identity = 79/106 (74.53%), Postives = 90/106 (84.91%), Query Frame = 2 
Query:   26 VDSLPTSANQEHHVSMAPAAGKRLWEMAENTRGVLAVEWLAACQGLDLRNGLKTSPALEKARGILRSKVAFYEKDRFFAPDINAASELLATRCLNELVPAKLLPSL 343
            VDS+PTSANQE HVSMAP AGKRLWEMAEN R +LA+EWLAACQGLDLR GL+TS  LE AR +LR  V +Y+KDRFFAPDI  AS+L+A R +NEL+PAKLLPSL
Sbjct:  405 VDSIPTSANQEDHVSMAPRAGKRLWEMAENVRNILAIEWLAACQGLDLRKGLRTSAILEPARQLLRQHVTYYDKDRFFAPDIEVASQLIAQRHMNELMPAKLLPSL 510
[Close]
BLAST of EY675228 vs. ExPASy Swiss-Prot
Match: HUTH_PSEPU (Histidine ammonia-lyase OS=Pseudomonas putida GN=hutH PE=1 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 2.736e-39
Identity = 83/106 (78.30%), Postives = 89/106 (83.96%), Query Frame = 2 
Query:   26 VDSLPTSANQEHHVSMAPAAGKRLWEMAENTRGVLAVEWLAACQGLDLRNGLKTSPALEKARGILRSKVAFYEKDRFFAPDINAASELLATRCLNELVPAKLLPSL 343
            VDSLPTSANQE HVSMAPAAGKRLWEMAENTRGVLA+EWL ACQGLDLR GLKTS  LEKAR  LRS+VA Y++DRFFAPDI  A ELLA   L  L+PA +LPSL
Sbjct:  405 VDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLRKGLKTSAKLEKARQALRSEVAHYDRDRFFAPDIEKAVELLAKGSLTGLLPAGVLPSL 510
The following BLAST results are available for this feature:
BLAST of EY675228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
HUTH_PSEFS2.020e-5093.40Histidine ammonia-lyase OS=Pseudomonas fluorescens... [more]
HUTH_PSEPF1.147e-4587.74Histidine ammonia-lyase OS=Pseudomonas fluorescens... [more]
HUTH_PSESM9.708e-4583.96Histidine ammonia-lyase OS=Pseudomonas syringae pv... [more]
HUTH_YERE83.453e-4279.63Histidine ammonia-lyase OS=Yersinia enterocolitica... [more]
HUTH_PSEAE6.512e-4176.42Histidine ammonia-lyase OS=Pseudomonas aeruginosa ... [more]
HUTH_PSEAB6.512e-4176.42Histidine ammonia-lyase OS=Pseudomonas aeruginosa ... [more]
HUTH_PSEA86.512e-4176.42Histidine ammonia-lyase OS=Pseudomonas aeruginosa ... [more]
HUTH_YERPS9.403e-4074.53Histidine ammonia-lyase OS=Yersinia pseudotubercul... [more]
HUTH_YERPE9.403e-4074.53Histidine ammonia-lyase OS=Yersinia pestis GN=hutH... [more]
HUTH_PSEPU2.736e-3978.30Histidine ammonia-lyase OS=Pseudomonas putida GN=h... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-007-H04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675228 ID=EY675228; Name=EY675228; organism=Citrus sinensis; type=EST; length=1038bp
GCGGGTACGGGTCCCGGATTCCCGGGTCGACAGCCTGCCGACTTCTGCGA
ACCAGGAACACCACGTATCCATGGCGCCGGCTGCGGGCAAACGCCTGTGG
GAAATGGCCGAAAACACCCGCGGTGTATTGGCGGTGGAATGGTTGGCGGC
GTGTCAGGGCCTGGACCTGCGCAATGGCTTGAAAACCTCACCTGCCCTTG
AAAAGGCGCGCGGGATCCTGCGCAGCAAAGTGGCGTTTTATGAGAAGGAC
CGGTTCTTTGCGCCGGACATCAATGCCGCCAGTGAATTGTTGGCGACGCG
TTGCCTGAATGAGCTGGTGCCGGCGAAGTTGCTGCCGAGCTTGTAAGAGC
GACACCGATCCAGTGTGGGAGCTGTCGAGCCCCGGTGAGGCTCCCACATT
TGATCTTCTACAGATTCGAATTTTCTCAGGATAAAAATAATTAAGGACGA
GAAATGCACCAGCAAGAAAAGACGCTAAAACGCGGGCTCTCCGCCCGAAC
ATATTCGCTTCATGGCGCTCGGTTCCGCCATCGGCACCGGGGCTGTTCTA
CGGCTCCGCCTCCGCCATCCAGATGGCCGGCCCTGCCGTACTCCTGGCCC
ACCTGATTCGGGGGCGCCCCCCTCTTCTGGGCCATGGCCCGCCCTCCGGG
GAAAATGGGCCATGCCAAACCCCGGGGGTCCGGGCTCCCTTTCGGGCCGT
AAACCCAACAATTTCCTGGGGGCCCCAGGGGCCGGCTTTTACCCACCGTG
GGAACTACCCCCTTTTAAAAGTGAATTTCATCGGGCCCTGGCGAAGATTC
CCCACACTTTGAATAGCTCAAAGAGGGATTTAGGGGATTCCCCAAAAAAC
ACCCCGCTATGAATCCGGGGAGGGAACAAGACCATGCGGATATGCGACAA
AAAGAAACACCTAAAAATACAGGAAAGAAGAGAACAATAAAATTCATTTG
TGAGAAAAAAAACGGGAAATCATTGTGCGTTTGTAGACTCCAACGCACTA
ACGCGAGGCGGGGGTGAAACGGAAAATCACACACCTAC
back to top