EY675217

Overview
NameEY675217
Unique NameEY675217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length240
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8526 contig Csv1_Contig8526:1..240. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
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BLAST of EY675217 vs. ExPASy Swiss-Prot
Match: OMP_BORPE (Outer membrane porin protein BP0840 OS=Bordetella pertussis GN=BP0840 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.116e-22
Identity = 43/79 (54.43%), Postives = 60/79 (75.95%), Query Frame = -2 
Query:    3 FGRQATLGLANDAWGTIEFGRQATVGSNYLADIDPFYTSYTQSNLGLGFSAANTMRWDNMIMYRSPSMSGLEFAAGYSF 239
            FGRQAT+GL +++WG ++FGRQ  + S Y   IDPF   + Q+N+G+G SA NT+R+DNM+MY++PS SG +F  GYSF
Sbjct:  108 FGRQATIGLQSESWGRLDFGRQTNIASKYFGSIDPFGAGFGQANIGMGMSAMNTVRYDNMVMYQTPSYSGFQFGIGYSF 186
The following BLAST results are available for this feature:
BLAST of EY675217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
OMP_BORPE1.116e-2254.43Outer membrane porin protein BP0840 OS=Bordetella ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-007-G03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675217 ID=EY675217; Name=EY675217; organism=Citrus sinensis; type=EST; length=240bp
TTGAAGGAATAGCCCGCGGCGAACTCCAAGCCGCTCATCGAGGGGCTGCG
ATACATGATCATGTTGTCCCAGCGCATGGTGTTGGCCGCGCTGAAACCCA
GGCCCAGGTTCGATTGGGTGTAGCTGGTGTAGAAGGGGTCGATATCGGCC
AGGTAGTTCGAGCCGACGGTGGCCTGGCGGCCGAATTCGATCGTGCCCCA
GGCGTCGTTGGCCAGCCCGAGGGTGGCCTGGCGGCCGAAC
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