EY656639

Overview
NameEY656639
Unique NameEY656639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY656639 vs. ExPASy Swiss-Prot
Match: ARNA_PECCP (Bifunctional polymyxin resistance protein arnA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.453e-32
Identity = 79/203 (38.92%), Postives = 114/203 (56.16%), Query Frame = 3
Query:   72 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 677
            + ++G  GFIG+HL E++L +  ++I  LD+ +D I   L      G  R  F   +I  H+  +E  IK  D+ + L AI TP +Y   PL     +F + L +V+ C   NKR++  ST EVYG            +  D  +    ED S  I G I KQRW Y+ +KQL++R+I+A GA+NGL FT+ RPFNW+GPR+D
Sbjct:  324 VLILGVNGFIGNHLTERLLRDDRYEIYGLDISSDAIARFL------GDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYNKRIVFPSTSEVYG------------MCDDKEF---DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFTLFRPFNWMGPRLD 505          
BLAST of EY656639 vs. ExPASy Swiss-Prot
Match: ARNA_ERWCT (Bifunctional polymyxin resistance protein arnA OS=Erwinia carotovora subsp. atroseptica GN=arnA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.453e-32
Identity = 79/203 (38.92%), Postives = 114/203 (56.16%), Query Frame = 3
Query:   72 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 677
            + ++G  GFIG+HL E++L +  ++I  LD+ +D I   L      G  R  F   +I  H+  +E  IK  D+ + L AI TP +Y   PL     +F + L +V+ C   NKR++  ST EVYG            +  D  +    ED S  I G I KQRW Y+ +KQL++R+I+A GA+NGL FT+ RPFNW+GPR+D
Sbjct:  325 VLILGVNGFIGNHLTERLLRDDRYEIYGLDISSDAIARFL------GDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYNKRIVFPSTSEVYG------------MCDDKEF---DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFTLFRPFNWMGPRLD 506          
BLAST of EY656639 vs. ExPASy Swiss-Prot
Match: ARNA_PSE14 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=arnA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.660e-31
Identity = 78/217 (35.94%), Postives = 119/217 (54.84%), Query Frame = 3
Query:   51 RPIKPVTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIK--------HLLEPESQTGADRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 677
            RP +   + ++G  GFIG+HL E++L +  + I  +D+ +D I+        H +E +     + I++H             IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG            + QD ++    ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  314 RPARRTRVLILGVNGFIGNHLSERLLQDDRYDIYGMDIGSDAIERLRTKPNFHFIEGDISIHTEWIEYH-------------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYG------------MCQDASF---NEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYG-QKGLQFTLFRPFNWMGPRLD 501          
BLAST of EY656639 vs. ExPASy Swiss-Prot
Match: ARNA_PSEU2 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=arnA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.699e-31
Identity = 79/229 (34.50%), Postives = 124/229 (54.15%), Query Frame = 3
Query:   15 MAGASVRLDLDGRPIKPVTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIK--------HLLEPESQTGADRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 677
            +AG+ +      R ++   + ++G  GFIG+HL E++L +  ++I  +D+ +D I+        H +E +     + I++H             IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG            + QD  +    ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  303 VAGSQMLDKAKRRSVRRTRVLILGVNGFIGNHLSERLLQDDRYEIYGMDIGSDAIERLRAKPNFHFIEGDISIHTEWIEYH-------------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYG------------MCQDANF---NEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYG-QKGLQFTLFRPFNWMGPRLD 502          
BLAST of EY656639 vs. ExPASy Swiss-Prot
Match: ARNA_SERP5 (Bifunctional polymyxin resistance protein arnA OS=Serratia proteamaculans (strain 568) GN=arnA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.831e-31
Identity = 83/222 (37.39%), Postives = 119/222 (53.60%), Query Frame = 3
Query:   72 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLAWL 734
            + ++G  GFIG+HL E++L +  + I  LD+ +D I   L      G  R  F   +I  H   +E  IK  D+ + L AI TP +Y   PL     +F + L +V+ C + NKR+I  ST EVYG            +  D  +    ED S  I G I KQRW Y+ +KQL++R+I+A GA+ GL+FT+ RPFNW+GPR+D    +D    G  R +  L
Sbjct:  318 VLILGVNGFIGNHLTERLLRDDRYDIYGLDIGSDAISRFL------GNPRFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIIFPSTSEVYG------------MCDDKEF---DEDHSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKEGLKFTLFRPFNWMGPRLD---NLDAARIGSSRAITQL 515          
BLAST of EY656639 vs. ExPASy Swiss-Prot
Match: ARNA_PSEPF (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf0-1) GN=arnA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.310e-31
Identity = 83/220 (37.73%), Postives = 121/220 (55.00%), Query Frame = 3
Query:   21 GASVRLDLDGRPIKPVTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 677
            G+ +R    GR  +   + ++G  GFIG+HL E++L +  +++  LD+ +D I  L          R  F   +I  H   +E  IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG            + QD  +    ED S  I G I KQRW Y+ +KQL++R+I+A GA+ GL FT+ RPFNW+GPR+D
Sbjct:  304 GSLLRGAESGRGPRRTRVLILGVNGFIGNHLSERLLRDERYEVYGLDIGSDAIDRL------RSHPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG------------MCQDKHF---DEDRSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLD 501          
BLAST of EY656639 vs. ExPASy Swiss-Prot
Match: ARNA_PSEF5 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=arnA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.310e-31
Identity = 81/227 (35.68%), Postives = 123/227 (54.19%), Query Frame = 3
Query:   21 GASVRLDLDGRPIKPVTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIK--------HLLEPESQTGADRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 677
            G+ +R    GR  +   + ++G  GFIG+HL E++L +  + +  LD+ +D I+        H +E +    ++ I++H             IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG            + QD  +    ED S  I G I KQRW Y+ +KQL++R+I+A GA+ GL FT+ RPFNW+GPR+D
Sbjct:  304 GSLLRGAESGRKPRRTRVLILGVNGFIGNHLSERLLRDDKYDVYGLDIGSDAIERLRSHPNFHFVEGDISIHSEWIEYH-------------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG------------MCQDKNF---DEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLD 501          
BLAST of EY656639 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP7 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=arnA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.310e-31
Identity = 75/203 (36.95%), Postives = 112/203 (55.17%), Query Frame = 3
Query:   72 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 677
            + ++G  GFIG+HL E++L +  ++I  LD+ +D I   L+        R  F   +I  H   +E  IK  D+ + L AI TP +Y   PL     +F + L +++ C + NKR+I  ST EVYG                       ED+S  + G I KQRW Y+ +KQL++R+I+A G +NGL+FT+ RPFNW+GPR+D
Sbjct:  318 VLILGVNGFIGNHLTERLLQDDNYEIYGLDIGSDAISRFLD------CPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYNKRIIFPSTSEVYGMCTDKNFD---------------EDSSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDKNGLKFTLFRPFNWMGPRLD 499          
BLAST of EY656639 vs. ExPASy Swiss-Prot
Match: ARNA_PROMH (Bifunctional polymyxin resistance protein arnA OS=Proteus mirabilis (strain HI4320) GN=arnA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.076e-30
Identity = 76/203 (37.44%), Postives = 114/203 (56.16%), Query Frame = 3
Query:   72 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 677
            + ++G  GFIG+HL E++L +  + I  +D+ +  I+  +      G  R  F   ++  H   +E  IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG            +  D  +    ED S  I G I KQRW Y+ +KQL++R+I+A GA+ GL+FT+ RPFNW+GPR+D
Sbjct:  318 VLILGVNGFIGNHLTERLLKDGNYDIYGMDIGSSAIERFI------GNPRFHFIEGDVSIHTEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRIIFPSTSEVYG------------MCDDKEF---DEDNSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKEGLKFTLFRPFNWMGPRLD 499          
BLAST of EY656639 vs. ExPASy Swiss-Prot
Match: ARNA_PSEFS (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain SBW25) GN=arnA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.406e-30
Identity = 79/227 (34.80%), Postives = 123/227 (54.19%), Query Frame = 3
Query:   21 GASVRLDLDGRPIKPVTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIK--------HLLEPESQTGADRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 677
            G+ +R    GR  +   + ++G  GFIG+HL E++L +  +++  LD+ +D I+        H +E +     + I++H             IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG            + QD  +    ED S  + G + KQRW Y+ +KQL++R+I+A GA+ GL FT+ RPFNW+GPR+D
Sbjct:  304 GSVLRGAESGRKPRRTRVLILGVNGFIGNHLSERLLRDDRYEVYGLDIGSDAIERLRSHPNFHYVEGDISIHTEWIEYH-------------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG------------MCQDQYF---DEDTSNLVVGPVNKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLD 501          
The following BLAST results are available for this feature:
BLAST of EY656639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_PECCP7.453e-3238.92Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ERWCT7.453e-3238.92Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSE141.660e-3135.94Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEU23.699e-3134.50Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SERP54.831e-3137.39Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEPF6.310e-3137.73Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEF56.310e-3135.68Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_KLEP76.310e-3136.95Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PROMH1.076e-3037.44Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEFS1.406e-3034.80Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-123-A08-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY656639 ID=EY656639; Name=EY656639; organism=Citrus sinensis; type=EST; length=885bp
CCACGCGTCCGGAAATGGCAGGCGCAAGCGTGAGATTGGATCTGGACGGG
AGGCCGATTAAGCCGGTGACGATATGCATGATCGGCGCCGGCGGCTTCAT
CGGCTCTCATCTCTGCGAAAAGATTCTCCTTGAGACCCCTCACAAAATTC
TAGCACTCGACGTCTACAATGACAAGATCAAGCACTTGCTCGAACCGGAG
TCACAGACTGGGGCCGACCGGATCCAGTTCCACCGACTCAACATCAAGCA
CGATTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTGACGATAAATC
TGGCGGCGATCTGTACGCCGGCGGATTACAACACGCGGCCGTTGGACACG
ATCTACAGCAACTTTATTGACGCGCTTCCGGTGGTCAAGTACTGTTCGGA
GAACAACAAGCGTTTGATTCACTTCTCTACTTGTGAAGTATATGGAAAGA
CCATTGGAAGCTTTCTTCCTAAAGATAGTCCTCTTCGGCAGGATCCTGCT
TACTATGTTCTTAAAGAAGATGCCTCCCCCTGCATTTTTGGCTCTATTGA
GAAGCAGAGGTGGTCGTATGCATGTGCAAAGCAATTGATTGAAAGGCTGA
TTTATGCTGAGGGTGCAGAGAATGGTCTTGAGTTCACCATTGTGAGGCCC
TTTAACTGGATTGGTCCGAGGATGGACTTCATTCCCGGCATTGATGGTCC
AAGTGAGGGTGTTCCNAGGGTTCTGGCATGGCTTAGTACAATCTCCTTCG
CCGGCAACACTCAAGCTTGTCGACGGTGGCCATCTCAGAGGACTTTTATT
ACATAAAGATGCTNATGAGCTGNTCTATTATTGATGAAATCAGCAGGGGC
ATGGCATATTTCATGTGGCACCCCCACATGAGTAC
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