EY675108

Overview
NameEY675108
Unique NameEY675108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length971
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675108 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 315.849 bits (808), Expect = 1.845e-90
Identity = 149/169 (88.17%), Postives = 159/169 (94.08%), Query Frame = 3
Query:   39 MATSAIPQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG 545
            MATS I QSAFAGQT L+  NE VRKVG  +GGR++MRRT+KSAP+SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+KNGVKFGEAVWFKAG+QIF EGGLDYLGNPNL+HAQSILAIWACQVVLMG
Sbjct:    1 MATSTIQQSAFAGQTLLKPQNELVRKVG-GNGGRVSMRRTIKSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMG 168          

HSP 2 Score: 39.2762 bits (90), Expect = 1.845e-90
Identity = 17/20 (85.00%), Postives = 17/20 (85.00%), Query Frame = 2
Query:  569 GGGPLGERLDPLYPGGAF*P 628
            GGGPLGE LD LYPGGAF P
Sbjct:  176 GGGPLGEGLDQLYPGGAFDP 195          
BLAST of EY675108 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 328.176 bits (840), Expect = 4.481e-89
Identity = 174/241 (72.20%), Postives = 187/241 (77.59%), Query Frame = 3
Query:   39 MATSAIPQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFC*RIQNLVAVLLVKDLTHFTRVGLFNHLGLAG*PRSILLN*KARDPKKGPSGLCSPGLGFFFSGYLALGKG 761
            MATSAI QSAFAGQTAL+QSNE V K+G   GGR++MRRTVKSAP SIWYGPDRPKYLGPFS+Q PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGF      +    L + L      G F+ LGLA  P       K ++ K G   + S   GFF    +  GKG
Sbjct:    1 MATSAIQQSAFAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV-EGYRVGGGPLGEGLDPIYPGGAFDPLGLADDP-DAFAELKVKEIKNGRLAMFSM-FGFFVQA-IVTGKG 237          
BLAST of EY675108 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 1.442e-87
Identity = 173/241 (71.78%), Postives = 185/241 (76.76%), Query Frame = 3
Query:   39 MATSAIPQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFC*RIQNLVAVLLVKDLTHFTRVGLFNHLGLAG*PRSILLN*KARDPKKGPSGLCSPGLGFFFSGYLALGKG 761
            MATSAI QSAFAGQTAL+  NE VRK+G   GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGF      +    L + L      G F+ LGLA  P +     K ++ K G   + S   GFF    +  GKG
Sbjct:    1 MATSAIQQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFV-EGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEA-FAELKVKEIKNGRLAMFSM-FGFFVQA-IVTGKG 237          
BLAST of EY675108 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 1.442e-87
Identity = 172/241 (71.37%), Postives = 186/241 (77.18%), Query Frame = 3
Query:   39 MATSAIPQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFC*RIQNLVAVLLVKDLTHFTRVGLFNHLGLAG*PRSILLN*KARDPKKGPSGLCSPGLGFFFSGYLALGKG 761
            MATSAI QSAFAGQTAL+  NE VRK+G  +GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILA+WA QVVLMG       +    L + L      G F+ LGLA  P +     K ++ K G   + S   GFF    +  GKG
Sbjct:    1 MATSAIEQSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLI-EGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEA-FAELKVKEIKNGRLAMFSM-FGFFVQA-IVTGKG 237          
BLAST of EY675108 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 2.082e-86
Identity = 170/241 (70.54%), Postives = 183/241 (75.93%), Query Frame = 3
Query:   39 MATSAIPQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFC*RIQNLVAVLLVKDLTHFTRVGLFNHLGLAG*PRSILLN*KARDPKKGPSGLCSPGLGFFFSGYLALGKG 761
            MAT AI QSAF GQ   +  NEF+RKVG    GRITMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMGF      +    L + L      G F+ LGLA  P +     K ++ K G   + S   GFF    +  GKG
Sbjct:    1 MATCAIQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFV-EGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEA-FAELKVKEIKNGRLAMFSM-FGFFVQA-IVTGKG 237          
BLAST of EY675108 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 6.696e-85
Identity = 168/241 (69.71%), Postives = 182/241 (75.52%), Query Frame = 3
Query:   39 MATSAIPQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFC*RIQNLVAVLLVKDLTHFTRVGLFNHLGLAG*PRSILLN*KARDPKKGPSGLCSPGLGFFFSGYLALGKG 761
            MATSAI QSAF G+T LRQ NEF+RK G     R TMRRTVKSAP+SIWYGPDRPKYLGPFSEQ PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPE+L KNGVKFGEAVWFKAG+QIF+EGGLDYLGNPNLIHAQSILAIWA QVVLMGF      +    L + L      G F+ LGLA  P S     K ++ K G   + S   GFF    +  GKG
Sbjct:    1 MATSAIQQSAFTGKTGLRQGNEFIRKRGNFGQARFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFV-EGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDS-FAELKVKELKNGRLAMFSM-FGFFVQA-IVTGKG 237          
BLAST of EY675108 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 1.142e-84
Identity = 168/241 (69.71%), Postives = 186/241 (77.18%), Query Frame = 3
Query:   39 MATSAIPQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFC*RIQNLVAVLLVKDLTHFTRVGLFNHLGLAG*PRSILLN*KARDPKKGPSGLCSPGLGFFFSGYLALGKG 761
            MA SAI  SAFAGQTAL+Q +E VRKVGV+DG R +MRRTVK+ PQSIWYG DRPK+LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC+FPE+LSKNGV+FGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMG       +    L + L      G F+ LGLA  P +     K ++ K G   + S   GFF    +  GKG
Sbjct:    1 MAASAIQSSAFAGQTALKQRDELVRKVGVSDG-RFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLI-EGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEA-FAELKVKEIKNGRLAMFSM-FGFFVQA-IVTGKG 236          
BLAST of EY675108 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 3.439e-81
Identity = 168/241 (69.71%), Postives = 183/241 (75.93%), Query Frame = 3
Query:   39 MATSAIPQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFC*RIQNLVAVLLVKDLTHFTRVGLFNHLGLAG*PRSILLN*KARDPKKGPSGLCSPGLGFFFSGYLALGKG 761
            MA SA+ Q+     TA R+ +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGF      +    L + L      G F+ LGLA  P       K ++ K G   + S   GFF    +  GKG
Sbjct:    1 MAASALHQTTSFLGTAPRR-DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFV-EGYRVGGGPLGEGLDKVYPGGAFDPLGLADDP-DTFAELKVKELKNGRLAMFSM-FGFFVQA-IVTGKG 235          
BLAST of EY675108 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 3.439e-81
Identity = 168/241 (69.71%), Postives = 183/241 (75.93%), Query Frame = 3
Query:   39 MATSAIPQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFC*RIQNLVAVLLVKDLTHFTRVGLFNHLGLAG*PRSILLN*KARDPKKGPSGLCSPGLGFFFSGYLALGKG 761
            MA SA+ Q+     TA R+ +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGF      +    L + L      G F+ LGLA  P       K ++ K G   + S   GFF    +  GKG
Sbjct:    1 MAASALHQTTSFLGTAPRR-DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFV-EGYRVGGGPLGEGLDKVYPGGAFDPLGLADDP-DTFAELKVKELKNGRLAMFSM-FGFFVQA-IVTGKG 235          
BLAST of EY675108 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 7.661e-81
Identity = 166/243 (68.31%), Postives = 182/243 (74.90%), Query Frame = 3
Query:   39 MAT-SAIPQSAFAGQTALR-QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFC*RIQNLVAVLLVKDLTHFTRVGLFNHLGLAG*PRSILLN*KARDPKKGPSGLCSPGLGFFFSGYLALGKG 761
            MAT SAI  S+ AGQT LR Q NE V+KVG A   RITMRRTV+SAP+SIWYGPDRPKYLGPFSE TPSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIH RWAMLGALGCVFPE+L+KNG+KFGEAVWFKAGAQIFSEGGLDY GNPNLIHAQSILAIWACQVVLMG       +    L + L      G F+ LGLA  P +     K ++ K G   + S   GFF    +  GKG
Sbjct:    1 MATASAIQSSSLAGQTLLRPQQNELVKKVGTAQA-RITMRRTVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLI-EGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEA-CAELKVKEIKNGRLAMFSM-FGFFVQA-IVTGKG 238          
The following BLAST results are available for this feature:
BLAST of EY675108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB21_SILPR1.845e-9088.17Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_GOSHI4.481e-8972.20Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB26_PETSP1.442e-8771.78Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_TOBAC1.442e-8771.37Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB24_SOLLC2.082e-8670.54Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB215_PEA6.696e-8569.71Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB21_LEMGI1.142e-8469.71Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_ORYSJ3.439e-8169.71Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI3.439e-8169.71Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH7.661e-8168.31Chlorophyll a-b binding protein type I, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-B08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675108 ID=EY675108; Name=EY675108; organism=Citrus sinensis; type=EST; length=971bp
CTTCAGCAACAAAAGGAAAAGCTTTCGCATAAGAACATATGGCAACCTCT
GCTATCCCACAATCAGCATTTGCTGGCCAGACCGCCTTGAGGCAATCCAA
TGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGGCCGTATCACCATGA
GGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGTACGGCCCAGACCGC
CCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACTTGACTGG
TGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCAGCAGACC
CCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGCAGATGG
GCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAAGAA
TGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAATAT
TCTCTGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCT
CAGAGCATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTTATGGGGTTTTG
TTGAAGGATACAGAATTTGGTGGCGGTCCTCTTGGTGAAAGACTTGACCC
ACTTTACCCGGGTGGGGCTTTTTAACCACCTTGGTTTGGCTGGATGACCC
CGATCAATTTTGCTGAATTGAAAGGCAAGGGACCCCAAAAAAGGCCCGTC
TGGCTTATGTTCCCCAGGTTTGGGATTCTTTTTTTCAGGGTATTTGGCCC
TTGGGAAAGGGGCCCAAATTAAAAAACCCCTCACAAAACCCATTTTGCCA
AAATTCCGGGGGGCCAAAAAAGGCCCTGGGGGTTTTTTGCCCCCCAAACT
TTTTTTTTTCCCCGGAAAAAAAAAAAAAAAAAAAACCCACAAGAATTTGA
GGGGGGGGGGCTTTTTTTTTTCCCCCGGGGAAAAAAATTTATTATTTCCC
CTTTGTGTTTATCGAAAAAAA
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