EY675078

Overview
NameEY675078
Unique NameEY675078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1078
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY675078 vs. ExPASy Swiss-Prot
Match: YZ2R_AGRVI (Uncharacterized 52.8 kDa protein in TAR-I ttuC' 3'region OS=Agrobacterium vitis PE=4 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.111e-20
Identity = 42/109 (38.53%), Postives = 70/109 (64.22%), Query Frame = 2 
Query:  167 IGTDVNTGTMRFHFGILELSDGLQIVALAMGLFGVADFLKNINQIGGDTKVTSTKVSMKSMRPEAGDIKQSRGALVRGTAIGAAFGILPGTGPTIASFISYAVEKKVAR 493
            +G D+ TG  RF FG +EL++G+  V++A+G+FGVA+  +N+ Q   D +V   +V    +  E  D ++  G ++RGT +G+  G+LPG G  +ASF SY+ EK +++
Sbjct:  183 VGQDIYTGQERFTFGQMELTEGINFVSIAVGVFGVAEIFRNL-QDESDREVGVKRVMNLWLSKE--DFRRITGPVIRGTILGSILGVLPGGGHVLASFASYSAEKNLSK 288

HSP 2 Score: 38.5058 bits (88), Expect = 1.111e-20
Identity = 25/78 (32.05%), Postives = 42/78 (53.85%), Query Frame = 3 
Query:  507 FGRGAIKGIAGPEAPTSASTPDQLHPPP*AWASPGNPVRGLMLGAPDSPRHPLPGPKIMVQTSPNMFLGGLIATLLGS 740
            FG GAI+G+AGPE+  +A+      P       P +PV  L++GA    +   PGP + + + P +F G + +  +G+
Sbjct:  293 FGHGAIEGVAGPESANNAAAQTSFIPLL-TLGIPAHPVMALIVGA-FILQGITPGPDV-INSQPALFWGIIASMWIGN 367
The following BLAST results are available for this feature:
BLAST of EY675078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YZ2R_AGRVI1.111e-2038.53Uncharacterized 52.8 kDa protein in TAR-I ttuC' 3'... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-005-G03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675078 ID=EY675078; Name=EY675078; organism=Citrus sinensis; type=EST; length=1078bp
GCACTGCGGTACGGTCCGGATTCCCGGGTCGACGTGGCCTTCAAGTTCGG
CCCGGCCGCACCCCTTCTCGATGATGATGCTGGGCCTGCTGGCCGGCGCC
ACCCTGGCCAAGGGCTCGGCGATCAAGGGCGTGGCGATGGTGGTGGTCGG
CCTGTTGCTGGGCGTGATCGGCACCGACGTCAACACCGGCACCATGCGCT
TTCACTTCGGCATCCTCGAGCTGAGCGACGGCCTGCAGATCGTGGCGCTG
GCGATGGGCCTGTTCGGCGTGGCCGACTTCCTCAAGAACATCAACCAGAT
CGGCGGCGACACCAAGGTCACCAGCACCAAGGTCAGCATGAAGTCGATGC
GTCCCGAAGCCGGCGACATCAAGCAGTCGCGCGGCGCCCTGGTGCGCGGC
ACCGCCATCGGCGCGGCCTTCGGCATCCTGCCGGGCACCGGCCCGACCAT
CGCCTCGTTCATCTCGTACGCGGTGGAAAAGAAGGTGGCGCGCGAAACCG
CGCCGCTTCGGCCGCGGCGCCATCAAGGGCATCGCCGGCCCCGAGGCCCC
CACCAGCGCCTCGACCCCAGACCAGCTTCATCCCCCACCATGAGCCTGGG
CATCCCCGGGCAACCCGGTAAGGGGCCTGATGCTAGGCGCCCCTGATTCT
CCACGGCATCCCCTCCCGGGCCCAAAAATAATGGTCCAAACCAGCCCAAA
CATGTTTTTGGGGGGGTTGATCGCCACCCTACTGGGGTCCGGACAAGGTG
CTTGCTGTTGTCTGGAAAAAACCTCCCCACTGATTCGGGAGTGGGGGGGT
GCACCCCTAATTAACCCTTGACCCATTACACCATAATGTAATTCCCGGGG
GGGGGGATATTTAATTTTTTTTTGATGGATACGAGATAAGAGTATAGAAC
TACAATAATCAAAACCCACTTTAATCGAATAATAACTTATTGGAGGGAAG
ATAGTGACAAGACGCGGTTGCATACAAGAAAGAATGATAGACACCCAAAT
AACAAGATAAGGAGCTATCTACGACTAAACCGACGCTTAAAATCACTCAC
CCTACACGACTCGACTCAACAAATACAA
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