EY675066

Overview
NameEY675066
Unique NameEY675066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length968
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675066_ssr307 microsatellite EY675066_ssr307:307..318. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY675066 vs. ExPASy Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 5.027e-47
Identity = 56/81 (69.14%), Postives = 63/81 (77.78%), Query Frame = 3
Query:  375 LPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLPYDLNTIISAKPKDEKQSPKNLPGKLF 617
            L LK+RF+IQPLSP           K+I+NVK  IDKKAWPYVQNDLRLRASYL YDLNT+ISAKPK+EKQS K+L  KLF
Sbjct:  113 LALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQSLKDLTAKLF 193          

HSP 2 Score: 96.6709 bits (239), Expect = 5.027e-47
Identity = 60/110 (54.55%), Postives = 74/110 (67.27%), Query Frame = 2
Query:   56 GLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVA--RSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLGSA 379
            GLRG+S  QAVLEGS Q++G NRLN    SRV+V   R+G  +RAQQ  + PE+SRR++IGLVAAG+A GSFV+AV A+A PIKV            T NSD+ RD   A
Sbjct:   10 GLRGAS--QAVLEGSLQINGSNRLNI---SRVSVGSQRTGLVIRAQQNVSVPESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDFSLA 114          
BLAST of EY675066 vs. ExPASy Swiss-Prot
Match: PSBQ_SPIOL (Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea GN=PSBQ PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 6.550e-47
Identity = 63/104 (60.58%), Postives = 74/104 (71.15%), Query Frame = 2
Query:   56 GLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRD 367
            GLRG+S  QAVLEGS Q+SG NRL+ P+ SRVAV + G  +RAQQ S E ETSRRAM+G VAAG+ASGSFV+AVLA+A PI V            T NSD+ RD
Sbjct:   10 GLRGAS--QAVLEGSLQISGSNRLSGPTTSRVAVPKMGLNIRAQQVSAEAETSRRAMLGFVAAGLASGSFVKAVLAEARPIVVGPPPPLSGGLPGTENSDQARD 111          

HSP 2 Score: 97.8265 bits (242), Expect = 6.550e-47
Identity = 47/78 (60.26%), Postives = 57/78 (73.08%), Query Frame = 3
Query:  384 KERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLPYDLNTIISAKPKDEKQSPKNLPGKLF 617
            K+RF++QPL P            +ILNVK+ ID+KAWP +QNDLRLRASYL YDL T+ISAKPKDEK+S + L  KLF
Sbjct:  118 KDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLF 195          
BLAST of EY675066 vs. ExPASy Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 4.802e-41
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 3
Query:  375 LPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLPYDLNTIISAKPKDEKQSPKNLPGKLF 617
            L LK+RF++QPL P           KDI+NVK LID+KAWPYVQNDLR +ASYL YDLNTIIS+KPKDEK+S K+L  KLF
Sbjct:  107 LALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKDLTTKLF 187          

HSP 2 Score: 82.8037 bits (203), Expect = 4.802e-41
Identity = 60/110 (54.55%), Postives = 71/110 (64.55%), Query Frame = 2
Query:   56 GLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVA-RSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKV-XXXXXXXXXXXXTLNSDEPRDLGSA 379
            GL G+S   AVLEGS +++G +RLN   + RVAVA RS   VRAQQ+    ETSRR++IGLVAAG+A GSFVQAVLADA  IKV             T NSD+ RD   A
Sbjct:    6 GLHGAS--PAVLEGSLKINGSSRLNG--SGRVAVAQRSRLVVRAQQSE---ETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALA 108          
BLAST of EY675066 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSJ (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0544800 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.926e-33
Identity = 48/82 (58.54%), Postives = 63/82 (76.83%), Query Frame = 3
Query:  372 DLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLPYDLNTIISAKPKDEKQSPKNLPGKLF 617
            DLPL+ERF++QPL P           +DI+N+K LI+KK WP+V++DLRLRASYL YDL T+I++KPKDEK+  K+L GKLF
Sbjct:   99 DLPLRERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLF 180          

HSP 2 Score: 58.5362 bits (140), Expect = 8.926e-33
Identity = 39/93 (41.94%), Postives = 52/93 (55.91%), Query Frame = 2
Query:   92 EGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADAT-PIKVXXXXXXXXXXXXTLNSDEPRD 367
            +G    +GP R  A   SR+AV      VRA  A+ + +T RRA++GLVA G+A G+  QA LA+A  PIK+            TLNSD+ RD
Sbjct:   13 QGVQLPAGPRR--AGGRSRLAV------VRADAAAADVQTGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARD 97          
BLAST of EY675066 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.926e-33
Identity = 48/82 (58.54%), Postives = 63/82 (76.83%), Query Frame = 3
Query:  372 DLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLPYDLNTIISAKPKDEKQSPKNLPGKLF 617
            DLPL+ERF++QPL P           +DI+N+K LI+KK WP+V++DLRLRASYL YDL T+I++KPKDEK+  K+L GKLF
Sbjct:   99 DLPLRERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLF 180          

HSP 2 Score: 58.5362 bits (140), Expect = 8.926e-33
Identity = 39/93 (41.94%), Postives = 52/93 (55.91%), Query Frame = 2
Query:   92 EGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADAT-PIKVXXXXXXXXXXXXTLNSDEPRD 367
            +G    +GP R  A   SR+AV      VRA  A+ + +T RRA++GLVA G+A G+  QA LA+A  PIK+            TLNSD+ RD
Sbjct:   13 QGVQLPAGPRR--AGGRSRLAV------VRADAAAADVQTGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARD 97          
BLAST of EY675066 vs. ExPASy Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.603e-31
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 3
Query:  372 DLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLPYDLNTIISAKPKDEKQSPKNLPGKLF 617
            DLPLKERF++QPL P           +DI+N+K LIDKKAWPYVQNDLRLRASYL YDL T+I++KPK+EK+S K L GKLF
Sbjct:   99 DLPLKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKELTGKLF 180          

HSP 2 Score: 43.8986 bits (102), Expect = 3.603e-31
Identity = 36/101 (35.64%), Postives = 49/101 (48.51%), Query Frame = 2
Query:   71 SHSQAVLEGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNE-PETSRRAMIGLVAAGVASGSFVQAVLADAT-PIKVXXXXXXXXXXXXTLNSDEPRD 367
            + + A + G SQ   P+R  A S +R AV      VRA    +   +  RRA+IGLVA G+  G+  QA  A+    IK+            TLNSD+ RD
Sbjct:    2 AQAMASMTGLSQGVLPSR-RADSRTRTAVV----IVRASAEGDAVAQAGRRAVIGLVATGIVGGALSQAARAETVKTIKIGAPPPPSGGLPGTLNSDQARD 97          
BLAST of EY675066 vs. ExPASy Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.749e-25
Identity = 58/92 (63.04%), Postives = 69/92 (75.00%), Query Frame = 3
Query:  348 TLMSQETXD--LPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLPYDLNTIISAKPKDEKQSPKNLPGKLF 617
            TL S +T D  LPLKERF++QPL P           +DI+N+K LIDKKAWPYVQNDLRLRASYL YDL T+I++KPK+EK+S K L GKLF
Sbjct:   85 TLNSDQTRDFDLPLKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKELTGKLF 176          
BLAST of EY675066 vs. ExPASy Swiss-Prot
Match: PSBQ_ONOVI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Onobrychis viciifolia GN=PSBQ PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.198e-17
Identity = 53/93 (56.99%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  348 TLMSQETXDL--PLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLPYDLNTIISAKPKDEKQSPK-NLPGKLF 617
            TL S E  DL  PLKERF+IQPLSP           K+I+ VK+ ID+K      NDLRLRASYL YDLNT+IS+KPK++KQS K +  GKLF
Sbjct:  102 TLNSDEARDLKLPLKERFYIQPLSPTEAAQRQRESAKEIVAVKKFIDQKLGHMFINDLRLRASYLRYDLNTVISSKPKEQKQSLKESSAGKLF 194          

HSP 2 Score: 79.7221 bits (195), Expect = 2.762e-14
Identity = 53/108 (49.07%), Postives = 66/108 (61.11%), Query Frame = 2
Query:   77 SQAVLEGSSQL-SGPNRLNAPSNSRVAVARSGFTVRAQQ---------ASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDL 370
            +  +LEGS QL SG NR  + S+SR       F VRAQQ         ++ +P+++RRAM+GLVA G+AS SFVQAVLA+A PIKV            TLNSDE RDL
Sbjct:    6 ASGLLEGSLQLMSGSNR--SSSSSRTRGPAGVFIVRAQQQEQQQGMSSSAADPQSNRRAMLGLVATGLASASFVQAVLAEAKPIKVGGPPPPSGGLGGTLNSDEARDL 111          
The following BLAST results are available for this feature:
BLAST of EY675066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSBQ2_ARATH5.027e-4769.14Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
PSBQ_SPIOL6.550e-4760.58Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ1_ARATH4.802e-4165.43Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ_ORYSJ8.926e-3358.54Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ_ORYSI8.926e-3358.54Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ1_MAIZE3.603e-3165.85Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ2_MAIZE7.749e-2563.04Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
PSBQ_ONOVI1.198e-1756.99Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-005-E09-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675066 ID=EY675066; Name=EY675066; organism=Citrus sinensis; type=EST; length=968bp
AAGTTTCTGAAACCTGATTTAGTGAAAAATGGCACAAGCTATGGCGTCAA
TGGCTGGCTTACGTGGATCCTCCCACTCGCAGGCTGTTCTTGAAGGTAGC
TCCCAGCTCAGTGGCCCAAACCGCTTGAACGCCCCTAGCAACAGCAGAGT
TGCTGTGGCTCGCTCTGGTTTCACTGTTAGAGCCCAGCAGGCATCAAACG
AGCCTGAAACTAGCCGCCGTGCTATGATTGGTCTTGTTGCTGCAGGTGTG
GCCTCAGGTTCCTTTGTTCAAGCTGTACTTGCTGATGCCACTCCCATCAA
AGTTGGTCCTCCTCCTCCACCCTCTGGCGGATTGCCTGGAACGTTGAACT
CTGATGAGCCAAGAGACCTNGGATCTGCCACTGAAGGAGAGGTTCTTCAT
CCAACCACTTAGTCCAGCCCAGGCGGCAGAGAGAGCAAAGGCGTCAGCAA
AGGATATTCTTAATGTCAAGGAATTAATAGACAAGAAGGCCTGGCCCTAT
GTTCAGAATGATCTCCGTCTCAGGGCCTCATACCTTCCCTATGACCTCAA
CACTATCATTTCTGCTAAACCCAAAGATGAAAAACAATCCCCCAAGAACC
TCCCTGGAAAGCTCTTTCCGAACCATCGGCAATCTTGGACCTGCGGCAAA
AATTAAAACCACCCCTGAAACAAAAAAAAACTATGCTGAAAACGGATCTA
CCCCGAAACGAAGGTTTCCCCCCAGGGTTGGGTAAACAAAATTTAAAAAA
ATCTGGAAGAAAACTTATTTTTTTCTTTTTTGGGAGGGGAAAAACTTTCG
GGGGAAATTTTTTTTGGGCAGGCGGGGGGGTTCCCCTCCAAAAAATCACG
AAAAAAAAATTTTTTGCCAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGG
CCCCCCCCCTAGAAGGGAAACCAAAAAAATTTTTTAATTCTCAAGCGGGG
GGGGTGGAGGGGGCCCAC
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