EY743383

Overview
NameEY743383
Unique NameEY743383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY743383 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 8.647e-12
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 2 
Query:   92 SEKACDDQCIFWVGPFIVAFVAAFYHQYILMAAAINALGSFLINA 226
            +EKA DDQ IFWVGPF+ A  AA YHQYIL A+AI ALGSF  NA
Sbjct:  234 NEKAWDDQWIFWVGPFLGALAAAAYHQYILRASAIKALGSFRSNA 278

HSP 2 Score: 26.1794 bits (56), Expect = 8.647e-12
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 1 
Query:   61 RSFGAAVIYNKRKS 102
            RSFGAAVIYN  K+
Sbjct:  224 RSFGAAVIYNNEKA 237
[Close]
BLAST of EY743383 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 3.186e-11
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 2 
Query:   92 SEKACDDQCIFWVGPFIVAFVAAFYHQYILMAAAINALGSF 214
            +EKA DDQ IFWVGP I A  AAFYHQ+IL AAAI ALGSF
Sbjct:  241 NEKAWDDQWIFWVGPMIGAAAAAFYHQFILRAAAIKALGSF 281

HSP 2 Score: 26.1794 bits (56), Expect = 3.186e-11
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 1 
Query:   61 RSFGAAVIYNKRKS 102
            RSFGAAVIYN  K+
Sbjct:  231 RSFGAAVIYNNEKA 244
The following BLAST results are available for this feature:
BLAST of EY743383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PIP27_ARATH8.647e-1271.11Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP24_ARATH3.186e-1175.61Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-093-G08-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY743383 ID=EY743383; Name=EY743383; organism=Citrus sinensis; type=EST; length=933bp
CCACGCGTCCGGATTCTCTTGGCCACCATCCCCATCACAGGAACAGGCAT
CAAACCGACTAGGAGTTTTGGAGCTGCTGTGATCTACAACAAGCGAAAAA
GCCTGCGATGACCAATGTATCTTCTGGGTTGGACCATTCATTGTAGCTTT
CGTTGCTGCATTCTACCACCAATACATTCTCATGGCAGCAGCCATTAATG
CTCTTGGATCCTTCTTGATCAATGCTTAAGCTTTAAATATGATGTCTGGA
GCTTCCAAAGTGAAAAATTTACAGCATGATCATGACTGCAACTCAGTAAC
GAACGCCCTTTAAGAAATCTCTTTTCGAGCTCTTTACAGGGCCATTGAAT
TTGAGCTGAATTAGAGGGCTATTGAATTGTACATATTTTACCATTATGCA
TTTTATGCCTATGCTTTATCTATGTGCAACGGTGGATTTTGGTATCCCAT
TTTATGTTTTTTCTTTGCGTGTGATAATAAATGTTGGTGGTGTTTCTTAA
ATCTCGTATTTCTCAATATTTTTGTTATCCTTTCCTTTAACTTTATTCCA
GGTGGGGGTGTTTATGTTCGTAATGTAAATAAACCCCCGGCTTCTGTGGG
TTATTCCAAACTCCCTTTCAGGTGGAAATTGAAAAATTGGAAAACATAGG
GGGGCGCCGGCCCATTAGGATCCCAGGGTTAAAAAACTCGGGCAAAAAAA
AAATCAAAAAATCCTTTAAAAGAATCAACAAATTTTTAAATTTCCTGGGA
CCCCCCTTTTTTTACACCCCCGGAAAAGGAAAAAAAACCCCGGTGGTTTC
CCCTTAAAAAATCTCCCATTGCCAAAAACAAACCCCCCCTTTTTCACCCC
TCCGGGGGGGGAAAAAAAAAAAAAAAAATTCCCCCCCCACAAATTGCCCC
CTCTCCCAAAAAATTTGGGGCCGCAACACCAAG
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