EY674996

Overview
NameEY674996
Unique NameEY674996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length222
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8519 contig Csv1_Contig8519:37..258. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
[Close]
BLAST of EY674996 vs. ExPASy Swiss-Prot
Match: GLTI_SALTY (Glutamate/aspartate periplasmic-binding protein OS=Salmonella typhimurium GN=gltI PE=3 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 1.755e-15
Identity = 42/74 (56.76%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:    1 FTVNIFEIGTRLLVKKDKDGKPSYSDFADLKGKNVVTTAGTTSERIIKAMNADKQMGMNVISAKDHGESFQMLE 222
            F+  IF +GTRLL KK  D K    DF DLKGK VV T+GTTSE ++  +N +++MGM +ISAKDHG+SF+ LE
Sbjct:  126 FSDTIFVVGTRLLTKKGGDIK----DFPDLKGKAVVVTSGTTSEILLHKLNEEQKMGMRIISAKDHGDSFRTLE 195
[Close]
BLAST of EY674996 vs. ExPASy Swiss-Prot
Match: GLTI_ECOLI (Glutamate/aspartate periplasmic-binding protein OS=Escherichia coli (strain K12) GN=gltI PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.322e-14
Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:    1 FTVNIFEIGTRLLVKKDKDGKPSYSDFADLKGKNVVTTAGTTSERIIKAMNADKQMGMNVISAKDHGESFQMLE 222
            F+  IF +GTRLL KK  D K    DFA+LK K VV T+GTTSE ++  +N +++M M +ISAKDHG+SF+ LE
Sbjct:  126 FSDTIFVVGTRLLTKKGGDIK----DFANLKDKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLE 195
The following BLAST results are available for this feature:
BLAST of EY674996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GLTI_SALTY1.755e-1556.76Glutamate/aspartate periplasmic-binding protein OS... [more]
GLTI_ECOLI4.322e-1454.05Glutamate/aspartate periplasmic-binding protein OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-004-E08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674996 ID=EY674996; Name=EY674996; organism=Citrus sinensis; type=EST; length=222bp
TTCACCGTCAATATCTTCGAAATCGGCACCCGTCTGCTGGTCAAGAAAGA
CAAGGATGGCAAGCCGTCCTACAGCGATTTCGCTGACCTCAAAGGCAAGA
ACGTCGTGACCACCGCCGGCACCACGTCCGAGCGCATCATCAAGGCGATG
AACGCCGACAAGCAGATGGGCATGAACGTCATCTCCGCCAAGGACCATGG
TGAATCCTTCCAGATGCTGGAA
back to top