EY656306

Overview
NameEY656306
Unique NameEY656306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length911
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY656306 vs. ExPASy Swiss-Prot
Match: TSSC1_DANRE (Protein TSSC1 OS=Danio rerio GN=tssc1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.131e-24
Identity = 49/148 (33.11%), Postives = 80/148 (54.05%), Query Frame = 1
Query:  355 NSPQ-LELIAALDAHA-GKINCVLWRTSGRHDKLVSIYDEDIFLWSLHCSDNNAQVPS---IQSSGMLHYLSGGAWDPHDLNAGAATC-ESSVQMWDLTSMGKTNSIEHAH---VRNVDYDTKK*HVLXTAADESGIHLWDLRCLKAP 771
            N+PQ LEL+  LD  A G + CVLW   G   +++S+ +  + LW L  S   A + S   ++  G L + + G W PH      AT  +++++ WDL SM +   IE+AH   VR++D++  K + L +  D+  +  WD+R +  P
Sbjct:  118 NNPQTLELLCHLDNSAHGSMACVLWEPMGDGKRVISLAENHVLLWDLQESSAKATISSSATLEGKGQLKF-TAGKWSPHHNCTQLATANDTAIRGWDLRSMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDVRHISEP 264          

HSP 2 Score: 52.373 bits (124), Expect = 2.131e-24
Identity = 25/76 (32.89%), Postives = 39/76 (51.32%), Query Frame = 2
Query:   65 YGLKYQARCISHVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPSRSTDFLHCF 292
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S  P+       C+
Sbjct:    9 YGLEFQARALTAQTAETDAIRFLVGTQSLKFDNQIHIIDFDDENNMINKSVLLHDAGEIWHISGSPADKAVLTTCY 84          
BLAST of EY656306 vs. ExPASy Swiss-Prot
Match: TSSC1_XENLA (Protein TSSC1 OS=Xenopus laevis GN=tssc1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.347e-23
Identity = 47/147 (31.97%), Postives = 77/147 (52.38%), Query Frame = 1
Query:  355 NSPQLELIAALDAHA-GKINCVLWRTSGRHDKLVSIYDEDIFLWSLHCSDNNAQVPS---IQSSGMLHYLSGGAWDPHDLNAGAATC-ESSVQMWDLTSMGKTNSIEHAH---VRNVDYDTKK*HVLXTAADESGIHLWDLRCLKAP 771
            N+  LEL+  LD+ A G + CV W   G   KL+S+ D  + +W L  S   + + S   ++  G L + SG  W PH      AT  +++++ WD+ SM +   IE+AH   VR++D++  K + L +  D+  +  WD R +  P
Sbjct:  119 NAQSLELLCHLDSTAHGNMACVTWEPLGDGKKLLSLADNYLLIWDLQESSTKSVLSSSATLEGKGQLRFTSG-KWSPHHNCTQVATANDTAIRGWDIRSMRQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNIHEP 264          

HSP 2 Score: 53.1434 bits (126), Expect = 1.347e-23
Identity = 24/76 (31.58%), Postives = 40/76 (52.63%), Query Frame = 2
Query:   65 YGLKYQARCISHVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPSRSTDFLHCF 292
            YGL++QAR ++   A+TD   FL GT SL+ +N++H++        +    L  H  EIW + + P+       C+
Sbjct:    9 YGLEFQARALTAQTAETDAIRFLVGTQSLRYDNQIHVIDFDDENNIINKNVLLHHAGEIWQIGASPADRNVLATCY 84          
BLAST of EY656306 vs. ExPASy Swiss-Prot
Match: TSSC1_RAT (Protein TSSC1 OS=Rattus norvegicus GN=Tssc1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.347e-23
Identity = 48/143 (33.57%), Postives = 75/143 (52.45%), Query Frame = 1
Query:  367 LELIAALDAHA-GKINCVLWRTSGRHDKLVSIYDEDIFLWSLHCSDNNAQVPS---IQSSGMLHYLSGGAWDPHDLNAGAATC-ESSVQMWDLTSMGKTNSIEHAH---VRNVDYDTKK*HVLXTAADESGIHLWDLRCLKAP 771
            LEL+  LD  A G + CV+W   G   K++S+ D  I LW L  S + A + S   ++  G L + S G W PH      AT  +++++ WD  SM +   IE+AH   VR++D++  K + L +  D+  +  WD R +  P
Sbjct:  123 LELLCHLDNGAQGNVACVVWEPMGDGKKVISLADSHILLWDLQPSSSQAVLASSAALEGRGQLKFTS-GRWSPHHNCTQVATASDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEP 264          

HSP 2 Score: 53.1434 bits (126), Expect = 1.347e-23
Identity = 29/95 (30.53%), Postives = 47/95 (49.47%), Query Frame = 2
Query:   65 YGLKYQARCISHVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPSRSTDFLHCFFHWRVIWGTNMANIQRCMA 349
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P+       C+        T+ + +Q C A
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGEIWHISASPADKGVLATCYNK------TSDSRVQACAA 97          
BLAST of EY656306 vs. ExPASy Swiss-Prot
Match: TSSC1_XENTR (Protein TSSC1 OS=Xenopus tropicalis GN=tssc1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.752e-23
Identity = 47/147 (31.97%), Postives = 76/147 (51.70%), Query Frame = 1
Query:  355 NSPQLELIAALDAHA-GKINCVLWRTSGRHDKLVSIYDEDIFLWSLHCSDNNAQVPS---IQSSGMLHYLSGGAWDPHDLNAGAATC-ESSVQMWDLTSMGKTNSIEHAH---VRNVDYDTKK*HVLXTAADESGIHLWDLRCLKAP 771
            N+  LEL+  LD  A G + CV W   G   KL+S+ D  + +W L  S   + + S   ++  G L + SG  W PH      AT  +++++ WD+ SM +   IE+AH   VR++D++  K + L +  D+  +  WD R +  P
Sbjct:  119 NAQALELLCHLDNTAHGNMACVTWEPLGDGKKLLSLADNYLMIWDLQESSTKSVLSSSVTLEGKGQLRFTSG-KWSPHHNCTQVATANDTAIRGWDIRSMRQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNIHEP 264          

HSP 2 Score: 54.299 bits (129), Expect = 1.752e-23
Identity = 25/76 (32.89%), Postives = 41/76 (53.95%), Query Frame = 2
Query:   65 YGLKYQARCISHVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPSRSTDFLHCF 292
            YGL++QAR ++   A+TD   FL GT SL+ +N++H++        +    L  H  EIW +S+ P+       C+
Sbjct:    9 YGLEFQARALAAQTAETDAIRFLVGTQSLRYDNQIHVIDFDDENNIINKNILLHHAGEIWQISASPADRNVLATCY 84          
BLAST of EY656306 vs. ExPASy Swiss-Prot
Match: TSSC1_MOUSE (Protein TSSC1 OS=Mus musculus GN=Tssc1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.280e-23
Identity = 47/143 (32.87%), Postives = 75/143 (52.45%), Query Frame = 1
Query:  367 LELIAALDAHA-GKINCVLWRTSGRHDKLVSIYDEDIFLWSLHCSDNNAQVPS---IQSSGMLHYLSGGAWDPHDLNAGAATC-ESSVQMWDLTSMGKTNSIEHAH---VRNVDYDTKK*HVLXTAADESGIHLWDLRCLKAP 771
            LEL+  LD  A G + CV+W   G   K++S+ D  I LW L  S + A + S   ++  G L + + G W PH      AT  +++++ WD  SM +   IE+AH   VR++D++  K + L +  D+  +  WD R +  P
Sbjct:  123 LELLCHLDNSAQGNVACVVWEPMGDGKKVISLADSHILLWDLQPSSSQAVLASSATLEGRGQLKF-TAGRWSPHHNCTQVATASDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEP 264          

HSP 2 Score: 52.7582 bits (125), Expect = 2.280e-23
Identity = 29/95 (30.53%), Postives = 46/95 (48.42%), Query Frame = 2
Query:   65 YGLKYQARCISHVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPSRSTDFLHCFFHWRVIWGTNMANIQRCMA 349
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P+       C+        T  + +Q C A
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGEIWHISASPADKGVLATCYNK------TTDSRVQACAA 97          
BLAST of EY656306 vs. ExPASy Swiss-Prot
Match: TSSC1_HUMAN (Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.861e-23
Identity = 48/143 (33.57%), Postives = 75/143 (52.45%), Query Frame = 1
Query:  367 LELIAALDAHA-GKINCVLWRTSGRHDKLVSIYDEDIFLWSLHCSDNNAQV---PSIQSSGMLHYLSGGAWDPHDLNAGAATC-ESSVQMWDLTSMGKTNSIEHAH---VRNVDYDTKK*HVLXTAADESGIHLWDLRCLKAP 771
            LEL+  LD  A G + CV+W   G   K++S+ D  I LW L  S + A +    S++  G L + S G W PH      AT  +++++ WD  SM +   IE+AH   VR++D++  K + L +  D+  +  WD R +  P
Sbjct:  123 LELLCHLDNTAHGNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLEGKGQLKFTS-GRWSPHHNCTQVATANDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEP 264          

HSP 2 Score: 51.9878 bits (123), Expect = 3.861e-23
Identity = 25/76 (32.89%), Postives = 40/76 (52.63%), Query Frame = 2
Query:   65 YGLKYQARCISHVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPSRSTDFLHCF 292
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P+       C+
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGEIWHISASPADRGVLTTCY 84          
BLAST of EY656306 vs. ExPASy Swiss-Prot
Match: TSSC1_GECJA (Protein TSSC1 OS=Gecko japonicus GN=TSSC1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.437e-22
Identity = 47/147 (31.97%), Postives = 76/147 (51.70%), Query Frame = 1
Query:  355 NSPQLELIAALDAHA-GKINCVLWRTSGRHDKLVSIYDEDIFLWSLHCSDNNAQV---PSIQSSGMLHYLSGGAWDPHDLNAGAATC-ESSVQMWDLTSMGKTNSIEHAH---VRNVDYDTKK*HVLXTAADESGIHLWDLRCLKAP 771
            N+  LEL+  LD  A G +  VLW   G   KL+S+ D  + LW L  S + A +    +++  G L + S G W PH      AT  +++++ WD+ +M +   IE AH   VR++D++  K + L +  D+  +  WD R +  P
Sbjct:  119 NAQTLELLCHLDNTAHGNMAGVLWEPMGDGKKLISLADNHLLLWDLQESSSKAVLSNSAALEGKGQLKFTS-GRWSPHHNCTQVATANDTAIRGWDIRTMSQIYCIESAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVSDP 264          

HSP 2 Score: 51.9878 bits (123), Expect = 2.437e-22
Identity = 25/76 (32.89%), Postives = 40/76 (52.63%), Query Frame = 2
Query:   65 YGLKYQARCISHVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPSRSTDFLHCF 292
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P+       C+
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQVGEIWHISASPADKGVLATCY 84          
BLAST of EY656306 vs. ExPASy Swiss-Prot
Match: TSSC1_MACFA (Protein TSSC1 OS=Macaca fascicularis GN=TSSC1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.084e-22
Identity = 47/143 (32.87%), Postives = 73/143 (51.05%), Query Frame = 1
Query:  367 LELIAALDAHA-GKINCVLWRTSGRHDKLVSIYDEDIFLWSLHCSDNNAQVPSIQS---SGMLHYLSGGAWDPHDLNAGAATC-ESSVQMWDLTSMGKTNSIEHAH---VRNVDYDTKK*HVLXTAADESGIHLWDLRCLKAP 771
            LEL+  LD  A   + CV+W   G   K++S+ D  I LW L  S + A + S  S    G L + S G W PH      AT  +++++ WD  +M +   IE+AH   VR++D++  K + L +  D+  +  WD R +  P
Sbjct:  123 LELLCHLDNTAHSNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLGGKGQLKFTS-GRWSPHHNCTQVATANDTTLRGWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEP 264          

HSP 2 Score: 51.9878 bits (123), Expect = 9.084e-22
Identity = 25/76 (32.89%), Postives = 40/76 (52.63%), Query Frame = 2
Query:   65 YGLKYQARCISHVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPSRSTDFLHCF 292
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P+       C+
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGEIWHISASPADRGVLATCY 84          
BLAST of EY656306 vs. ExPASy Swiss-Prot
Match: TSSC1_PONAB (Protein TSSC1 OS=Pongo abelii GN=TSSC1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.616e-14
Identity = 48/143 (33.57%), Postives = 75/143 (52.45%), Query Frame = 1
Query:  367 LELIAALDAHA-GKINCVLWRTSGRHDKLVSIYDEDIFLWSLHCSDNNAQV---PSIQSSGMLHYLSGGAWDPHDLNAGAATC-ESSVQMWDLTSMGKTNSIEHAH---VRNVDYDTKK*HVLXTAADESGIHLWDLRCLKAP 771
            LEL+  LD  A G + CV+W   G   K++S+ D  I LW L  S + A +    S++  G L + S G W PH      AT  +++++ WD  SM +   IE+AH   VR++D++  K + L +  D+  +  WD R +  P
Sbjct:  150 LELLCHLDNTAHGNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLEGKGQLKFTS-GRWSPHHNCTQVATANDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEP 291          
The following BLAST results are available for this feature:
BLAST of EY656306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TSSC1_DANRE2.131e-2433.11Protein TSSC1 OS=Danio rerio GN=tssc1 PE=2 SV=1[more]
TSSC1_XENLA1.347e-2331.97Protein TSSC1 OS=Xenopus laevis GN=tssc1 PE=2 SV=1[more]
TSSC1_RAT1.347e-2333.57Protein TSSC1 OS=Rattus norvegicus GN=Tssc1 PE=2 S... [more]
TSSC1_XENTR1.752e-2331.97Protein TSSC1 OS=Xenopus tropicalis GN=tssc1 PE=2 ... [more]
TSSC1_MOUSE2.280e-2332.87Protein TSSC1 OS=Mus musculus GN=Tssc1 PE=1 SV=1[more]
TSSC1_HUMAN3.861e-2333.57Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=1 SV=2[more]
TSSC1_GECJA2.437e-2231.97Protein TSSC1 OS=Gecko japonicus GN=TSSC1 PE=2 SV=... [more]
TSSC1_MACFA9.084e-2232.87Protein TSSC1 OS=Macaca fascicularis GN=TSSC1 PE=2... [more]
TSSC1_PONAB9.616e-1433.57Protein TSSC1 OS=Pongo abelii GN=TSSC1 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-118-B12-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY656306 ID=EY656306; Name=EY656306; organism=Citrus sinensis; type=EST; length=911bp
TACTCCGAGGTTCGATGAATCGAATCTAAGTGCAACAATGCAAGGAGGAT
CTTCAGGCATAGGCTATGGTCTCAAGTATCAAGCTAGATGCATATCACAT
GTCAAAGCAGACACGGATCACACCAGCTTCCTCACTGGAACTCTCAGCCT
CAAAGAAGAGAACGAGGTGCATTTGCTTCGGCTTTCATCCGGTGGAACCG
AGCTCATTTGCGAGGGTTTGTTCTCGCATCCTAACGAAATATGGGACCTC
AGTTCGTGTCCGTCTCGATCAACGGATTTTCTCCACTGTTTTTTCCACTG
GCGAGTCATATGGGGCACCAATATGGCAAATATCCAGAGGTGTATGGCCA
GCTAAATTCACCTCAGCTGGAGCTTATCGCCGCTCTTGATGCACATGCTG
GTAAGATTAATTGCGTTCTTTGGAGGACATCTGGAAGACATGATAAATTG
GTCAGCATATACGATGAAGATATTTTCTTGTGGAGCTTACATTGTTCAGA
CAATAATGCCCAGGTACCATCTATACAGTCATCTGGTATGCTGCATTATC
TATCTGGTGGAGCATGGGATCCGCATGATCTAAATGCTGGCGCAGCGACT
TGTGAATCATCAGTCCAGATGTGGGATCTCACATCAATGGGGAAGACAAA
TTCAATCGAGCATGCGCACGTCCGCAATGTGGACTATGACACCAAGAAGT
AGCATGTACTTNGTACTGCAGCAGATGAATCTGGGATACATTTATGGGAT
CTTAGATGCTTGAAGGCACCTGATCCGCGACTCCCCGGACCACACACTGG
ACTTGGGCTGTCTGCTGTAACCTGAGTATGATGGATTATTATGAGCGCTG
GTACGATCGACTGCAAATTATGGGTGGTTCACGTGTAGCATGAGAGCTTC
ATCTGAAGCTA
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