EY674981

Overview
NameEY674981
Unique NameEY674981
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY674981_ssr318 microsatellite EY674981_ssr318:318..329. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY674981 vs. ExPASy Swiss-Prot
Match: MED31_ARATH (Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana GN=At5g19910 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.422e-14
Identity = 39/75 (52.00%), Postives = 54/75 (72.00%), Query Frame = 3 
Query:   15 GEEASDAPSSPKKVHKDPDDGRQRFLLELEFIQCLANPT-LHSLFGSKSLILKTRVSLVT*RYLAYWKQPEDVRF 236
            G++AS+ PS PK  +KDPD GRQRFLLELEFIQCLANPT +H L  +++   +    +   +YL YW++PE ++F
Sbjct:    8 GDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYL--AQNRYFEDEAFIGYLKYLQYWQRPEYIKF 80
The following BLAST results are available for this feature:
BLAST of EY674981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MED31_ARATH2.422e-1452.00Mediator of RNA polymerase II transcription subuni... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-004-D01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674981 ID=EY674981; Name=EY674981; organism=Citrus sinensis; type=EST; length=887bp
CCGCTGCACAGGACGGCGAAGAAGCATCCGATGCCCCATCCTCGCCAAAG
AAGGTGCACAAAGATCCAGACGACGGGAGACAACGCTTTTTGCTTGAACT
GGAATTCATTCAGTGTCTTGCTAATCCCACATTACATTCGCTATTTGGCT
CAAAATCACTAATTTTGAAGACGAGGGTTTCATTGGTTACTTGAAGATAT
CTTGCGTACTGGAAACAGCCAGAAGACGTTAGATTTAGAGAGAACCCACG
TAGACATCAGATTTCCTGAACGAGCAAAAATAGCAAGACACGGCAACGCC
AGAGGACAACCAGCCAAAAGAAGAAGAAGACGAAGGACACAAGGAGGACG
CAAAGAACGAAAAAGACAAGAAAAAAGACAAACAAAGAACAAAAAAGGGT
ATACAGAAAAACAAAAGAAGGAAGCAGGAGAAAGAAAGACGCGCAAAGAG
CAAGCAGGAGGAAGAGAACAAAAAAGACGAGAAAGGAAAAGAAATGGAAA
CGAAAGAGAACAAAAAAAAAAAAAAGAAAGACAAAAAGAAAAAAAATAGA
AAACAAAGACAAGAAAAAAGACAGAAAGGAAAGAAAAAAAACAGCACAGA
AAAAAACGAAAGGGAAGAACAAGCAGAACGAAGACGGAAAAGAGGGAGAG
AGGGGAGATAGGGAAAAAAGGAGCGCAAGCGAAAAAGAGAACAAAAACAA
GAAAAAGAGAAAAAAAAGAAAAAGAGAAACCAAAAAACGAAAGGAAGAAA
AAGACACAACAACACACAGCGAGGCAAAACACCAAAGACGGAAACGCGCA
GAGGAAGCCAAAAAGAAAAAAAAAGAGGAAACAGACACAAGAAAGGGCAC
GAAAACGACGAACAGAAAGCGAAGAAAAGAAGAGCGA
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