EY674978

Overview
NameEY674978
Unique NameEY674978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1046
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674978 vs. ExPASy Swiss-Prot
Match: MED31_ARATH (Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana GN=At5g19910 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 3.044e-62
Identity = 107/121 (88.43%), Postives = 113/121 (93.39%), Query Frame = 3
Query:   15 GEEASDAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRTK 377
            G++AS+ PS PK  YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQN NFR AMAHPANKELAHRQQF++WKNYRNNR K
Sbjct:    8 GDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKELAHRQQFYYWKNYRNNRLK 128          
BLAST of EY674978 vs. ExPASy Swiss-Prot
Match: MED31_DICDI (Putative mediator of RNA polymerase II transcription subunit 31 OS=Dictyostelium discoideum GN=med31 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 8.637e-33
Identity = 58/96 (60.42%), Postives = 76/96 (79.17%), Query Frame = 3
Query:   84 RFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNR 371
            RF++ELEF+QCL+NP Y++YLAQNRYF+D+AF+ YL YLQYW++PEY KFI+YP  LYFL+LLQ   FR  + H  + +  H QQF+ W+ YRNNR
Sbjct:   55 RFIMELEFIQCLSNPRYLNYLAQNRYFQDKAFVNYLVYLQYWKKPEYAKFIVYPQSLYFLDLLQEERFRQELNHSQSTDFIHEQQFYHWQYYRNNR 150          
BLAST of EY674978 vs. ExPASy Swiss-Prot
Match: MED31_DANRE (Mediator of RNA polymerase II transcription subunit 31 OS=Danio rerio GN=med31 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 5.422e-27
Identity = 53/108 (49.07%), Postives = 71/108 (65.74%), Query Frame = 3
Query:   54 VYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRTK 377
            V +  +  RQRF LELEFVQCLANP Y+++LAQ  Y  ++ F+ YLKYL YW+ PEY KF+ YPHCL+ LELLQ  +FR  + +    +    QQ   W++Y   RT+
Sbjct:    4 VMETDEQARQRFQLELEFVQCLANPNYLNFLAQRGYLREKPFVNYLKYLLYWKEPEYAKFLKYPHCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRTR 111          
BLAST of EY674978 vs. ExPASy Swiss-Prot
Match: MED31_MOUSE (Mediator of RNA polymerase II transcription subunit 31 OS=Mus musculus GN=Med31 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 5.995e-26
Identity = 52/105 (49.52%), Postives = 69/105 (65.71%), Query Frame = 3
Query:   63 DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRTK 377
            D    R RF LELEFVQCLANP Y+++LAQ  YF+D+AF+ YLKYL YW+ PEY K++ YP CL+ LELLQ  +FR  + +    +    QQ   W++Y   R +
Sbjct:   10 DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRVR 114          
BLAST of EY674978 vs. ExPASy Swiss-Prot
Match: MED31_BOVIN (Mediator of RNA polymerase II transcription subunit 31 OS=Bos taurus GN=MED31 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 7.830e-26
Identity = 52/105 (49.52%), Postives = 69/105 (65.71%), Query Frame = 3
Query:   63 DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRTK 377
            D    R RF LELEFVQCLANP Y+++LAQ  YF+D+AF+ YLKYL YW+ PEY K++ YP CL+ LELLQ  +FR  + +    +    QQ   W++Y   R +
Sbjct:   10 DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMR 114          
BLAST of EY674978 vs. ExPASy Swiss-Prot
Match: MED31_HUMAN (Mediator of RNA polymerase II transcription subunit 31 OS=Homo sapiens GN=MED31 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.336e-25
Identity = 52/105 (49.52%), Postives = 69/105 (65.71%), Query Frame = 3
Query:   63 DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRTK 377
            D    R RF LELEFVQCLANP Y+++LAQ  YF+D+AF+ YLKYL YW+ PEY K++ YP CL+ LELLQ  +FR  + +    +    QQ   W++Y   R +
Sbjct:   10 DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKDPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMR 114          
BLAST of EY674978 vs. ExPASy Swiss-Prot
Match: MED31_XENTR (Mediator of RNA polymerase II transcription subunit 31 OS=Xenopus tropicalis GN=med31 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 6.628e-25
Identity = 50/100 (50.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query:   78 RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRTK 377
            R RF LELEFVQCLANP Y+++LAQ  YF+D++F+ YLKYL YW+ PEY K++ YP CL+ LELLQ  +FR  + +    +    QQ   W++Y   R +
Sbjct:   12 RIRFQLELEFVQCLANPNYLNFLAQRGYFKDKSFVNYLKYLLYWKDPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMR 111          
BLAST of EY674978 vs. ExPASy Swiss-Prot
Match: MD31B_XENLA (Mediator of RNA polymerase II transcription subunit 31-B OS=Xenopus laevis GN=med31-B PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 6.628e-25
Identity = 50/100 (50.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query:   78 RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRTK 377
            R RF LELEFVQCLANP Y+++LAQ  YF+D++F+ YLKYL YW+ PEY K++ YP CL+ LELLQ  +FR  + +    +    QQ   W++Y   R +
Sbjct:   13 RIRFQLELEFVQCLANPNYLNFLAQRGYFKDKSFVNYLKYLLYWKDPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMR 112          
BLAST of EY674978 vs. ExPASy Swiss-Prot
Match: MD31A_XENLA (Mediator of RNA polymerase II transcription subunit 31-A OS=Xenopus laevis GN=med31-A PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 8.657e-25
Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:   78 RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRTK 377
            R RF LELEFVQCLANP Y+++LAQ  YF+D+ F+ Y+KYL YW+ PEY K++ YP CL+ LELLQ  +FR  + +    +    QQ   W++Y   R +
Sbjct:   12 RIRFQLELEFVQCLANPNYLNFLAQRGYFKDKPFVNYMKYLLYWKEPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRVR 111          
BLAST of EY674978 vs. ExPASy Swiss-Prot
Match: MED31_DROME (Mediator of RNA polymerase II transcription subunit 31 OS=Drosophila melanogaster GN=MED31 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.477e-24
Identity = 48/100 (48.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query:   78 RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRTK 377
            ++R+ +ELEFVQCL+NP Y+++LAQ  +F+D++FI YLKYLQYW+ P+Y K++MYP CLYFL+LLQ  +FR  + +    +    Q    W++Y   R K
Sbjct:   19 KRRWQIELEFVQCLSNPNYLNFLAQRGFFKDQSFINYLKYLQYWKEPDYAKYLMYPMCLYFLDLLQYEHFRREIVNSQCCKFIDDQAILQWQHYTRKRIK 118          
The following BLAST results are available for this feature:
BLAST of EY674978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
MED31_ARATH3.044e-6288.43Mediator of RNA polymerase II transcription subuni... [more]
MED31_DICDI8.637e-3360.42Putative mediator of RNA polymerase II transcripti... [more]
MED31_DANRE5.422e-2749.07Mediator of RNA polymerase II transcription subuni... [more]
MED31_MOUSE5.995e-2649.52Mediator of RNA polymerase II transcription subuni... [more]
MED31_BOVIN7.830e-2649.52Mediator of RNA polymerase II transcription subuni... [more]
MED31_HUMAN1.336e-2549.52Mediator of RNA polymerase II transcription subuni... [more]
MED31_XENTR6.628e-2550.00Mediator of RNA polymerase II transcription subuni... [more]
MD31B_XENLA6.628e-2550.00Mediator of RNA polymerase II transcription subuni... [more]
MD31A_XENLA8.657e-2549.00Mediator of RNA polymerase II transcription subuni... [more]
MED31_DROME1.477e-2448.00Mediator of RNA polymerase II transcription subuni... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-004-C08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674978 ID=EY674978; Name=EY674978; organism=Citrus sinensis; type=EST; length=1046bp
CCGCTGCCAAGGACGGCGAAGAAGCATCCGATGCCCCATCCTCGCCAAAG
AAGGTGTATAAAGATCCAGACGACGGGAGACAACGCTTTTTGCTTGAACT
GGAATTCGTTCAATGTCTTGCTAATCCCACTTACATTCACTATTTGGCTC
AGAATCGCTATTTTGAAGACGAGGCTTTCATTGGTTACTTGAAATATCTT
CAGTACTGGCAACGGCCGGAGTACATTAAATTTATAATGTATCCACATTG
CCTCTATTTTCTTGAACTTCTACAAAATGCAAACTTCCGCAATGCTATGG
CACATCCTGCCAACAAGGAGTTGGCACATAGGCAGCAATTCTTTTTCTGG
AAGAACTATAGAAACAATCGGACTAAAGCACATTTTACCAAGGCCTCTTC
CTGAACCTGCTGAGGCTCCACCACCTGCTGCTGCTCCACCTCTGCCACCT
GCACCACCTGTGCCGACTCCTGTGACAGCTGCCTTCAGGGCCAGGCCCTT
TTCTCCTATGCAGTATGGAAATCCCCCCAGGAATCAGCTCTGAATGAAAA
ATGAATATTGAGGAATAACCACCATTGATCGAAAAAAAAAGGGAAAAAAA
AATGGTTAAATTTGGGATAAACATTCCTGGGGCCCTTAAACTTTATAAAA
AAAGGCCAATTGGATAAAGCCAAGGGATTAAAAGGGGTTTATTGGAATTC
CAAAAAATTTAGAAGGGGGAAATTCAATTTCCTGCCGGGCCCTTCCTACC
CTTTTTATCAAGGGGGGCTAAATTTTCTTTTTTTGGTCTGGGGGGGAGGG
GGCCCCAAAAACCCCATCAAATTTTTTTATAAACCCCCCCCAAAAATTTC
TTTAATTTTTCCCCACCAAGGGGCCTCAACGAAAACCCTTTAAAAATTAT
TAGGGGGCAAAGCCCACTTTTACCAGTGTGTTTTGGGAGCCAATAGAATA
ATTTATTTTTTATTTTTTTTTTTTATTTTATTGAGAGAATTATTACAACA
AAAGAAAAAAAACATAAATAATAAATATTGATAGAAAACGAATTGG
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