EY674972

Overview
NameEY674972
Unique NameEY674972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1004
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674972 vs. ExPASy Swiss-Prot
Match: GAE1_ARATH (UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 4.449e-63
Identity = 115/140 (82.14%), Postives = 123/140 (87.86%), Query Frame = 3
Query:   12 FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYN 431
            FTRNILQGKPIT+YRGKN VDLARDFTYIDDIVKGCLGSLD            RG APYRIFNLGNTSPVTVP LV+ILE+HLKVKAK+N +EMPGNGDVPFTHANISSA+ EFGY+PTTDL+TGLKKFVRWYLSYYGYN
Sbjct:  283 FTRNILQGKPITIYRGKNRVDLARDFTYIDDIVKGCLGSLDSSGKSTGSGGKKRGAAPYRIFNLGNTSPVTVPILVDILEKHLKVKAKRNFVEMPGNGDVPFTHANISSARNEFGYKPTTDLETGLKKFVRWYLSYYGYN 422          
BLAST of EY674972 vs. ExPASy Swiss-Prot
Match: GAE2_ARATH (UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.257e-49
Identity = 97/145 (66.90%), Postives = 115/145 (79.31%), Query Frame = 3
Query:   12 FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRGKRV 446
            FTR+IL+GK I+++ G NH  +ARDFTYIDDIVKGCLG+LD            RG A  R+FNLGNTSPV V  LV+ILER LKVKAK+N++++P NGDVPFTHANISSAQ+EFGY+P+TDLQTGLKKFVRWYL YY    GK+V
Sbjct:  287 FTRDILKGKAISIFEGANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVSILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQREFGYKPSTDLQTGLKKFVRWYLGYYKQG-GKKV 430          
BLAST of EY674972 vs. ExPASy Swiss-Prot
Match: GAE4_ARATH (UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.144e-49
Identity = 95/137 (69.34%), Postives = 108/137 (78.83%), Query Frame = 3
Query:   12 FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 422
            FT++IL+GK I+++   NH  +ARDFTYIDDIVKGCL +LD            RGPA  R+FNLGNTSPV V  LV ILER LKVKAKKN+I+MP NGDVPFTHANIS AQ+E GY+PTTDLQTGLKKFVRWYLSYY
Sbjct:  292 FTKDILKGKSISIFESANHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVSDLVRILERQLKVKAKKNLIKMPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 428          
BLAST of EY674972 vs. ExPASy Swiss-Prot
Match: GAE3_ARATH (UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 3.095e-48
Identity = 95/144 (65.97%), Postives = 111/144 (77.08%), Query Frame = 3
Query:   12 FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRGKR 443
            FTR+IL+GK I+++ G NH  +ARDFTYIDDIVKGCLG+LD            RG A  R+FNLGNTSPV V  LV ILER LKVKAK+N++++P NGDV FTHANISSAQ+E GY+PTTDLQTGLKKF RWYL Y  YN GK+
Sbjct:  286 FTRDILKGKAISIFEGVNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVTILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTDLQTGLKKFARWYLGY--YNGGKK 427          
BLAST of EY674972 vs. ExPASy Swiss-Prot
Match: GAE6_ARATH (UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 5.114e-43
Identity = 82/138 (59.42%), Postives = 106/138 (76.81%), Query Frame = 3
Query:   12 FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYG 425
            FT++IL GK I +YR +++ ++ARDFTYIDDIVKGC+G+LD            RG A  R++NLGNTSPV V +LV+ILE  L  KAKK++I+MP NGDVP+THAN+S A K+FGY+PTTDL  GL+KFV+WY+ YYG
Sbjct:  307 FTKDILHGKSIDIYRTQDNQEVARDFTYIDDIVKGCVGALDTAEKSTGSGGKKRGQAQLRVYNLGNTSPVPVGRLVSILEGLLGTKAKKHLIKMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVGYYG 444          
BLAST of EY674972 vs. ExPASy Swiss-Prot
Match: GAE5_ARATH (UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.139e-42
Identity = 83/143 (58.04%), Postives = 106/143 (74.13%), Query Frame = 3
Query:   12 FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRGK 440
            FT++IL+GK ITV+   +   +ARDFTYIDDIVKGCLG+LD            +GPA +RI+NLGNTSPV V KLV ILE+ LK+KAKK ++ +P NGDV FTHANI+ AQ E GY+P  DL+TGLKKFV+WY+ +Y  ++ K
Sbjct:  291 FTKDILKGKTITVFESPDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGPAMFRIYNLGNTSPVPVTKLVTILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQAELGYKPAVDLETGLKKFVKWYMGFYTGSKKK 433          
BLAST of EY674972 vs. ExPASy Swiss-Prot
Match: CAPI_STAAU (Protein capI OS=Staphylococcus aureus GN=capI PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.312e-19
Identity = 53/143 (37.06%), Postives = 81/143 (56.64%), Query Frame = 3
Query:   12 FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGP------APYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 422
            FT+ I+  + I VY   NH ++ RDFTY+DDIV+  +  L               P      APY+++N+GN SPV + + V  +E  L  +A+KN +++   GDVP T+AN+    ++  ++P T +Q G+ KFV WYL YY
Sbjct:  195 FTKAIVNDQAIDVY---NHGNMMRDFTYVDDIVEA-ISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQP-GDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY 332          
BLAST of EY674972 vs. ExPASy Swiss-Prot
Match: Y1055_METJA (Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.943e-19
Identity = 52/134 (38.81%), Postives = 79/134 (58.96%), Query Frame = 3
Query:   12 FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYL 413
            F +NIL GK I VY   N+ ++ RDFTYI D+V G L ++             +    Y IFNLGN+ PV +   + ++E++L  KAKK  + M  +GDV  T+A++S ++K  GY+P   ++ GLK+F  W+L
Sbjct:  201 FAKNILLGKEIEVY---NYGNMERDFTYISDVVDGILRAI-------------KKDFDYEIFNLGNSKPVKLMYFIELIEKYLNKKAKKKFLPMQ-DGDVLRTYADLSKSEKLLGYKPKVTIEEGLKRFCNWFL 317          
BLAST of EY674972 vs. ExPASy Swiss-Prot
Match: YCL2_ECO11 (Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia coli O111:H- PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.436e-18
Identity = 52/142 (36.62%), Postives = 78/142 (54.93%), Query Frame = 3
Query:   12 FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGP-----APYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 422
            FT+ +L+GK I VY   N+  + RDFTYIDDI +  +   D             G      APYR++N+GN+SPV +   +  LE  L ++AKKN++ +   GDV  T A+  +  +  G+ P T ++ G+K FV WY  +Y
Sbjct:  195 FTKAMLEGKSIDVY---NYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQ-PGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFY 332          
The following BLAST results are available for this feature:
BLAST of EY674972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GAE1_ARATH4.449e-6382.14UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thali... [more]
GAE2_ARATH1.257e-4966.90UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thali... [more]
GAE4_ARATH2.144e-4969.34UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thali... [more]
GAE3_ARATH3.095e-4865.97UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thali... [more]
GAE6_ARATH5.114e-4359.42UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thali... [more]
GAE5_ARATH1.139e-4258.04UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thali... [more]
CAPI_STAAU2.312e-1937.06Protein capI OS=Staphylococcus aureus GN=capI PE=3... [more]
Y1055_METJA3.943e-1938.81Uncharacterized protein MJ1055 OS=Methanocaldococc... [more]
YCL2_ECO117.436e-1836.62Uncharacterized 37.6 kDa protein in cld 5'region O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-004-B10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674972 ID=EY674972; Name=EY674972; organism=Citrus sinensis; type=EST; length=1004bp
CCACGCGTCCGTTCACGAGAAATATTCTCCAAGGCAAACCAATCACGGTT
TATCGTGGGAAGAATCACGTCGACTTGGCACGAGATTTTACTTACATTGA
CGATATCGTGAAGGGTTGTTTAGGTTCGCTGGATACCTCGGGTAAGAGTA
CCGGGTCGGGCGGAAAGAAGCGGGGCCCAGCACCGTACCGGATCTTTAAT
TTGGGGAACACGTCACCGGTCACGGTACCTAAGCTGGTGAATATATTGGA
GAGACACCTGAAGGTAAAAGCCAAGAAGAATGTAATCGAAATGCCTGGAA
ACGGCGACGTCCCGTTCACGCATGCGAATATCAGTTCGGCCCAGAAGGAG
TTCGGGTACAGGCCCACGACGGATTTGCAAACCGGCTTGAAAAAATTTGT
TAGATGGTATCTCTCATATTACGGCTATAATCGTGGCAAACGTGTAAATT
AATTTTTTTTTCCTTTATGTTTTTTGCGTTTTACCTTCTTTTTTTCTTTT
TTTTTTGGGTTTTCGCGCCGTGGGAGGTGCGGGATTAGAGGGTTTTTTTT
TTTTGTTTTTTTTCCTTAAAAAAAACGAAAGGAACAAAAAAAACGTTTGT
AAAGGGGAAAAAAAGAAAAAAAGAAAAAAAGGTGGCCCCATTTATTTCTT
TTCTTGGGGGGGAAAGGGTAAAAGGGGGTCCATCCTCCCCCCCCCCGTAG
TTTTCTTTGGTTTTTGTTTTCCTCCATTTTGTTCCCTTTTTTTTTTGGGG
AAAGAAAAAGGAAAAAAAAAAAAACTTTCCAATTTTTCAAAAACCGGAAA
AAAAAAAAAAAAAAGGGGGGGGCCCCCCAAAAAAGGAACCAAGCTTATAG
TTTACCCCGGGGAGGGCCGAGCGCAATAGCCTCCTCCTTAAATAGGCGCC
CCACAAAAATTTATTTTACCCGGGGGGCCGGGGGAGTTTTTTTAAAAACA
AAGGGCTATGGGGAGGGGGGGGGAAAAAAACACACCTGGGGGTGGTTTGT
GTTT
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