EY674958

Overview
NameEY674958
Unique NameEY674958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length957
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_TOBAC (Uroporphyrinogen decarboxylase, chloroplastic OS=Nicotiana tabacum GN=DCUP PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 7.528e-57
Identity = 110/136 (80.88%), Postives = 123/136 (90.44%), Query Frame = 3
Query:   96 NVDLVVEISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALLQKFNT 503
            NVDLVVEISL PW V  P GVILFSDILTPLSGMNIPFDIIKGKGPVIFDP+ T A+V++VREF PE+SVPYVG+ALTI+R+EVNN++AVLGF GAPFTL SY VEGGSSK+F KIKRLAF++PKVLHALLQKF T
Sbjct:   96 NVDLVVEISLQPWKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKVLHALLQKFAT 231          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP2_ORYSJ (Uroporphyrinogen decarboxylase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0337600 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.570e-54
Identity = 109/157 (69.43%), Postives = 124/157 (78.98%), Query Frame = 3
Query:   33 RFGSGYPGSTHTSASLRAPP*NVDLVVEISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALLQKFNT 503
            R+   Y        S R    NVDLVVEISL PW V  P GVILFSDILTPL GMNIPFDI+KGKGPVIFDP+ T A V++VREF PEE VPYVG+AL I+REEVNNE+AVLGF GAPFTL SY VEGGSSK+F+KIK++AFS+P++LH LLQKF T
Sbjct:   74 RYMKSYQLLCERHPSFRERSENVDLVVEISLQPWKVFKPDGVILFSDILTPLPGMNIPFDIVKGKGPVIFDPLRTAAAVNEVREFVPEEWVPYVGQALNILREEVNNEAAVLGFVGAPFTLASYCVEGGSSKNFSKIKKMAFSEPEILHNLLQKFTT 230          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP2_ARATH (Uroporphyrinogen decarboxylase 2, chloroplastic OS=Arabidopsis thaliana GN=At2g40490 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 2.050e-54
Identity = 110/157 (70.06%), Postives = 123/157 (78.34%), Query Frame = 3
Query:   33 RFGSGYPGSTHTSASLRAPP*NVDLVVEISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALLQKFNT 503
            R+   Y        S R    N DLVVEISL PW V  P GVILFSDILTPLSGMNIPFDI+KGKGP+IF+P  + A+V QVREF PEESVPYVG+AL  +R EVNNE+AVLGF GAPFTL+SY +EGGSSK+F +IKRLAFSQPKVLHALLQKF T
Sbjct:   78 RYMKSYQTLCEKYPSFRDRSENADLVVEISLQPWKVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPIIFNPPQSAADVAQVREFVPEESVPYVGEALRRLRNEVNNEAAVLGFVGAPFTLSSYVIEGGSSKNFTQIKRLAFSQPKVLHALLQKFTT 234          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_HORVU (Uroporphyrinogen decarboxylase (Fragment) OS=Hordeum vulgare GN=DCUP PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 5.583e-52
Identity = 101/136 (74.26%), Postives = 116/136 (85.29%), Query Frame = 3
Query:   96 NVDLVVEISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALLQKFNT 503
            NVDLVVEISL PW V  P GVILFSDILTPL GMNIPFDI+KGKGPVI+DP+ T A V++VREF PEE VPYVG+AL ++R EV NE+AVLGF GAPFTL SY VEGGSSK+F+KIKR+AF++P +LH LLQKF T
Sbjct:   35 NVDLVVEISLQPWKVFKPDGVILFSDILTPLPGMNIPFDIVKGKGPVIYDPLRTAAAVNEVREFVPEEWVPYVGQALNLLRGEVKNEAAVLGFVGAPFTLASYCVEGGSSKNFSKIKRMAFAEPAILHNLLQKFTT 170          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_MAIZE (Uroporphyrinogen decarboxylase, chloroplastic OS=Zea mays GN=LES22 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 7.291e-52
Identity = 103/143 (72.03%), Postives = 117/143 (81.82%), Query Frame = 3
Query:   75 SLRAPP*NVDLVVEISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALLQKFNT 503
            S R    NVDLVVEISL PW V  P GVILFSDILTPL GMNIPFDI+KGKGPVI+DP+ T A V++VREF PEE VPYVG+AL I+R+EV NE+AVLGF GAPFTL SY VEGGSSK+F  IK++AFS+P +LH LLQKF T
Sbjct:   91 SFRERSENVDLVVEISLQPWKVFKPDGVILFSDILTPLPGMNIPFDIVKGKGPVIYDPLRTAAAVNEVREFVPEEWVPYVGQALNILRQEVKNEAAVLGFVGAPFTLASYCVEGGSSKNFTLIKKMAFSEPAILHNLLQKFTT 233          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_SYNP2 (Uroporphyrinogen decarboxylase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=hemE PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.433e-39
Identity = 80/140 (57.14%), Postives = 100/140 (71.43%), Query Frame = 3
Query:   75 SLRAPP*NVDLVVEISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALLQK 494
            S R    N DL +EISL PWH   P GVI+FSDILTPL GM IPFDII+ KGP+I +PI T A+VD +  FDP ES+P++   L  +R+EV N S VLGF GAP+TL +Y +EG SSK++  IK +AFS+P VLH+ L K
Sbjct:   46 SFRERSENPDLAIEISLQPWHAFQPDGVIMFSDILTPLPGMGIPFDIIESKGPIIENPIRTQAQVDAMTPFDPAESLPFIKTILGTLRQEVGNASTVLGFVGAPWTLAAYAIEGKSSKNYAIIKNMAFSEPAVLHSFLGK 185          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_CYAA5 (Uroporphyrinogen decarboxylase OS=Cyanothece sp. (strain ATCC 51142) GN=hemE PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 7.078e-39
Identity = 78/140 (55.71%), Postives = 100/140 (71.43%), Query Frame = 3
Query:   75 SLRAPP*NVDLVVEISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALLQK 494
            S R    N DL +EISL PW    P GVI+FSDILTPL GM IPFDI++ KGPVI  PI T  +VD +R  DPEES+P++   L  +R+EV N+S VLGF G+P+TL +Y +EG SSK++  IK +AFSQP++LH+ L K
Sbjct:   46 SFRERSENPDLAIEISLQPWRAFQPDGVIMFSDILTPLPGMGIPFDIVESKGPVIDPPIRTKEQVDNLRPLDPEESLPFIKTILQSLRQEVGNQSTVLGFVGSPWTLAAYAIEGKSSKNYAIIKSMAFSQPEILHSFLSK 185          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_SYNY3 (Uroporphyrinogen decarboxylase OS=Synechocystis sp. (strain PCC 6803) GN=hemE PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.577e-38
Identity = 77/140 (55.00%), Postives = 99/140 (70.71%), Query Frame = 3
Query:   75 SLRAPP*NVDLVVEISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALLQK 494
            S R    N DL +EISL PW    P GVI+FSDILTPL G+ IPFDII+ KGP+I  PI T A+VDQ+   DPE S+P++   L  +R+EV N+S VLGF GAP+TL +Y +EG SSK +  IK++AFS+P +LH+ L K
Sbjct:   46 SFRERSENPDLAIEISLQPWQAFQPDGVIMFSDILTPLPGIGIPFDIIESKGPIIDPPIRTQAQVDQLHALDPESSLPFIKTILGTLRKEVGNQSTVLGFVGAPWTLAAYAIEGKSSKDYKVIKQMAFSEPAILHSFLDK 185          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_MICAN (Uroporphyrinogen decarboxylase OS=Microcystis aeruginosa (strain NIES-843) GN=hemE PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.577e-38
Identity = 77/140 (55.00%), Postives = 99/140 (70.71%), Query Frame = 3
Query:   75 SLRAPP*NVDLVVEISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALLQK 494
            S R    N DL +EISL PW    P GVI+FSDILTPL+G+ IPFDII+ KGP+I  PI T A+VDQ+   DP++S+P++   L  +R+EV N+S VLGF GAP+TL +Y VEG  SK ++ IK +AFS+P VLH  L K
Sbjct:   46 SFRERSENADLAIEISLQPWRAFQPDGVIMFSDILTPLAGIGIPFDIIESKGPIIDSPIRTQAQVDQLNPLDPDQSLPFIKTILKTLRQEVGNKSTVLGFVGAPWTLAAYAVEGKGSKSYSVIKGMAFSEPSVLHQFLDK 185          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_CYAP7 (Uroporphyrinogen decarboxylase OS=Cyanothece sp. (strain PCC 7424) GN=hemE PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.060e-38
Identity = 77/140 (55.00%), Postives = 99/140 (70.71%), Query Frame = 3
Query:   75 SLRAPP*NVDLVVEISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALLQK 494
            S R    N DL +EISL PW    P GVI+FSDILTPL G+ IPFDII+ KGP+I  PI T  ++D +  FDP+++VP+V   L  +R+EV N+S VLGF GAP+TL +Y VEG SSK ++ IK +AFS+P +LH LL K
Sbjct:   46 SFRERSENADLAIEISLQPWRAFQPDGVIMFSDILTPLPGIGIPFDIIESKGPIIDPPIRTQQQIDHLHPFDPDQTVPFVKTILKTLRQEVGNQSTVLGFVGAPWTLAAYAVEGKSSKTYSIIKSMAFSEPAILHQLLSK 185          
The following BLAST results are available for this feature:
BLAST of EY674958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
DCUP_TOBAC7.528e-5780.88Uroporphyrinogen decarboxylase, chloroplastic OS=N... [more]
DCUP2_ORYSJ1.570e-5469.43Uroporphyrinogen decarboxylase 2, chloroplastic OS... [more]
DCUP2_ARATH2.050e-5470.06Uroporphyrinogen decarboxylase 2, chloroplastic OS... [more]
DCUP_HORVU5.583e-5274.26Uroporphyrinogen decarboxylase (Fragment) OS=Horde... [more]
DCUP_MAIZE7.291e-5272.03Uroporphyrinogen decarboxylase, chloroplastic OS=Z... [more]
DCUP_SYNP22.433e-3957.14Uroporphyrinogen decarboxylase OS=Synechococcus sp... [more]
DCUP_CYAA57.078e-3955.71Uroporphyrinogen decarboxylase OS=Cyanothece sp. (... [more]
DCUP_SYNY31.577e-3855.00Uroporphyrinogen decarboxylase OS=Synechocystis sp... [more]
DCUP_MICAN1.577e-3855.00Uroporphyrinogen decarboxylase OS=Microcystis aeru... [more]
DCUP_CYAP72.060e-3855.00Uroporphyrinogen decarboxylase OS=Cyanothece sp. (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-003-H01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674958 ID=EY674958; Name=EY674958; organism=Citrus sinensis; type=EST; length=957bp
ACACACTCAACTAATTCAATTGAAAGGTTACGCGGTTCGGGTCCGGATAC
CCGGGTTCAACCCACACTTCCGCTTCATTACGTGCACCCCCTTAAAATGT
TGATCTTGTTGTGGAAATTTCTCTTCCCCCGTGGCATGTTTTATAGCCAC
ATGGTGTCATTTTATTCTCTGACATTTTAACTCCTCTTTCTGGGATGAAT
ATACCTTTTGACATTATCAAGGGTAAGGGTCCTGTCATATTTGATCCTAT
AAACACAGATGCAGAAGTTGACCAAGTGAGAGAATTTGATCCTGAGGAGT
CAGTTCCCTATGTTGGGAAAGCATTGACTATCATGCGAGAAGAGGTAAAC
AATGAATCAGCAGTTCTGGGTTTTGAAGGGGCTCCTTTCACCCTGACGTC
ATATGAGGTTGAGGGTGGTTCATCGAAGCACTTCAACAAAATAAAGCGAC
TAGCTTTCTCCCAACCCAAGGTCCTCCATGCATTGCTTCAGAAATTTAAC
ACCCTCTATGGCTAGATATGGAACATACCCAACCTGACCTAGGAGCTCAC
GGCTTTCCAAACCTCCAATCCATGGGCCATGGAACCTCATTCAGGTGAAA
TTTGAAAAGTTATATCGGCTTTAGCTTGATGCTAATTGTAAATCCCTGTG
TACAAATACATTCCTGATCTCTCTATAATTCCTTTTACCAATGGGACTAG
TTGGCTGCGTAAAAAAGATACTTTAAACGGAGATGAAGATTAGTAACTTG
ATCTGGAACATTGACTAGGTGAAAGGTAATCGGCAATTTGGGCCCCAAAC
TAGACAATAAAGGAAATGCACACCTGGGTAACTTTTTCGAGTAATAAAAC
TACACAGCACAAGCGATAAAGGGATCAAGTGAAAAAACGGTGAACTAGTA
GGAAAGTTAATGTCTGAGAACACAAGTATTAAGATACGAAAAAAAAAAGA
AACAAGA
back to top