EY674907

Overview
NameEY674907
Unique NameEY674907
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length952
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674907 vs. ExPASy Swiss-Prot
Match: TNPO2_HUMAN (Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 9.792e-33
Identity = 63/147 (42.86%), Postives = 87/147 (59.18%), Query Frame = 3
Query:   24 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSXXXXXXXXXXXXXXPRLKIILQHLMMAFWK 464
            E+LP L+P+++  L       W  +E+ +L LGAIAEGC++G+ P+L E++  LI  L DK  L+RSI+CWTLSR++ ++V     Q      + ++  LLKRILD NKRVQEAACS              P L  IL  L+ AF K
Sbjct:  390 ELLPHLLPLLKGLLF---HPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVS----QPPDMHLKPLMTELLKRILDGNKRVQEAACSAFATLEEEACTELVPYLSYILDTLVFAFGK 529          

HSP 2 Score: 51.2174 bits (121), Expect = 9.792e-33
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 1
Query:  442 TL*WLFGKYQRRNLRIVYDAIGTLADAVGIQTKPTLFIFEILMPPFIGK 588
            TL + FGKYQ +NL I+YDAIGTLAD+VG       +I + LMPP I K
Sbjct:  522 TLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQPEYI-QKLMPPLIQK 569          
BLAST of EY674907 vs. ExPASy Swiss-Prot
Match: TNPO2_MOUSE (Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.794e-33
Identity = 63/147 (42.86%), Postives = 87/147 (59.18%), Query Frame = 3
Query:   24 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSXXXXXXXXXXXXXXPRLKIILQHLMMAFWK 464
            E+LP L+P+++  L       W  +E+ +L LGAIAEGC++G+ P+L E++  LI  L DK  L+RSI+CWTLSR++ ++V     Q      + ++  LLKRILD NKRVQEAACS              P L  IL  L+ AF K
Sbjct:  390 ELLPHLLPLLKGLLF---HPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVS----QPPDMHLKPLMTELLKRILDGNKRVQEAACSAFATLEEEACTELVPYLSYILDTLVFAFGK 529          

HSP 2 Score: 51.2174 bits (121), Expect = 9.794e-33
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 1
Query:  442 TL*WLFGKYQRRNLRIVYDAIGTLADAVGIQTKPTLFIFEILMPPFIGK 588
            TL + FGKYQ +NL I+YDAIGTLAD+VG       +I + LMPP I K
Sbjct:  522 TLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQPEYI-QKLMPPLIQK 569          
BLAST of EY674907 vs. ExPASy Swiss-Prot
Match: TNPO_DICDI (Transportin OS=Dictyostelium discoideum GN=tnpo PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.162e-32
Identity = 65/154 (42.21%), Postives = 94/154 (61.04%), Query Frame = 3
Query:    3 SQMFSVYEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSXXXXXXXXXXXXXXPRLKIILQHLMMAFWK 464
            S +F   E L   +P+I+ +++      W  RE+A+LALGAIA+G   GL PHLS+++ +LI  L+D  PL+RSI+CWTLSR+S +I Q     +GR+    +++ LL RI+D NK+VQEAACS              P L++IL   + AF K
Sbjct:  419 SGIFPDAEYLSVTLPLIEQRMNEQNP--WPVRESAILALGAIADGSKNGLAPHLSKVIPYLINTLNDPKPLVRSITCWTLSRYSYWIAQ----ADGRDYLHPLVVNLLNRIVDNNKKVQEAACSAFATLEEEADLLLIPYLQMILVTFVNAFGK 566          

HSP 2 Score: 44.669 bits (104), Expect = 2.162e-32
Identity = 29/59 (49.15%), Postives = 34/59 (57.63%), Query Frame = 1
Query:  457 FGKYQRRNLRIVYDAIGTLADAVGIQ-TKPTLFIFEILMPPFIGKMGTWLSQIQKKNLL 630
            FGKYQ +NL I+YDAI TLA  VG +  KP L    IL+PP + K          KNLL
Sbjct:  564 FGKYQAKNLLILYDAISTLAKVVGNELNKPEL--INILVPPLLQKFNA--LDDSNKNLL 618          
BLAST of EY674907 vs. ExPASy Swiss-Prot
Match: TNPO1_MOUSE (Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.163e-32
Identity = 62/147 (42.18%), Postives = 88/147 (59.86%), Query Frame = 3
Query:   24 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSXXXXXXXXXXXXXXPRLKIILQHLMMAFWK 464
            E+LP ++P+++  L       W  +E+ +L LGAIAEGC++G+ P+L E++  LI  L DK  L+RSI+CWTLSR++ ++V     Q      + ++  LLKRILD+NKRVQEAACS              P L  IL  L+ AF K
Sbjct:  401 ELLPHILPLLKELLF---HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS----QPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSK 540          

HSP 2 Score: 50.447 bits (119), Expect = 2.163e-32
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1
Query:  442 TL*WLFGKYQRRNLRIVYDAIGTLADAVGIQTKPTLFIFEILMPPFIGK 588
            TL + F KYQ +NL I+YDAIGTLAD+VG       +I ++LMPP I K
Sbjct:  533 TLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI-QMLMPPLIQK 580          
BLAST of EY674907 vs. ExPASy Swiss-Prot
Match: TNPO1_HUMAN (Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.163e-32
Identity = 62/147 (42.18%), Postives = 88/147 (59.86%), Query Frame = 3
Query:   24 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSXXXXXXXXXXXXXXPRLKIILQHLMMAFWK 464
            E+LP ++P+++  L       W  +E+ +L LGAIAEGC++G+ P+L E++  LI  L DK  L+RSI+CWTLSR++ ++V     Q      + ++  LLKRILD+NKRVQEAACS              P L  IL  L+ AF K
Sbjct:  401 ELLPHILPLLKELLF---HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS----QPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSK 540          

HSP 2 Score: 50.447 bits (119), Expect = 2.163e-32
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1
Query:  442 TL*WLFGKYQRRNLRIVYDAIGTLADAVGIQTKPTLFIFEILMPPFIGK 588
            TL + F KYQ +NL I+YDAIGTLAD+VG       +I ++LMPP I K
Sbjct:  533 TLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI-QMLMPPLIQK 580          
BLAST of EY674907 vs. ExPASy Swiss-Prot
Match: TNPO1_BOVIN (Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.163e-32
Identity = 62/147 (42.18%), Postives = 88/147 (59.86%), Query Frame = 3
Query:   24 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSXXXXXXXXXXXXXXPRLKIILQHLMMAFWK 464
            E+LP ++P+++  L       W  +E+ +L LGAIAEGC++G+ P+L E++  LI  L DK  L+RSI+CWTLSR++ ++V     Q      + ++  LLKRILD+NKRVQEAACS              P L  IL  L+ AF K
Sbjct:  401 ELLPHILPLLKELLF---HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS----QPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSK 540          

HSP 2 Score: 50.447 bits (119), Expect = 2.163e-32
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1
Query:  442 TL*WLFGKYQRRNLRIVYDAIGTLADAVGIQTKPTLFIFEILMPPFIGK 588
            TL + F KYQ +NL I+YDAIGTLAD+VG       +I ++LMPP I K
Sbjct:  533 TLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI-QMLMPPLIQK 580          
BLAST of EY674907 vs. ExPASy Swiss-Prot
Match: IMB2_SCHPO (Importin subunit beta-2 OS=Schizosaccharomyces pombe GN=kap104 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.069e-29
Identity = 58/146 (39.73%), Postives = 89/146 (60.96%), Query Frame = 3
Query:   27 ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSXXXXXXXXXXXXXXPRLKIILQHLMMAFWK 464
            +L  ++P ++  L++   E WK +EA VLA+GAIAEGC+ G+  +L E+  + + LLD K PL+R+I+CWTL R+SK+       ++ ++ F  +L GLL+ ++D NK+VQEA CS              P L+ IL +L  AF K
Sbjct:  411 LLEIILPHLKQSLTS---EDWKVQEAGVLAVGAIAEGCMDGMVQYLPELYPYFLSLLDSKKPLVRTITCWTLGRYSKWASCLESEEDRQKYFVPLLQGLLRMVVDNNKKVQEAGCSAFAILEEQAGPSLVPYLEPILTNLAFAFQK 553          

HSP 2 Score: 40.817 bits (94), Expect = 2.069e-29
Identity = 22/50 (44.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:  439 STL*WLFGKYQRRNLRIVYDAIGTLADAVGIQTKPTLFIFEILMPPFIGK 588
            + L + F KYQR+N+ I+YDA+ TLAD VG       +I E+L+ P + K
Sbjct:  545 TNLAFAFQKYQRKNVLILYDAVQTLADYVGSALNDKRYI-ELLITPLLQK 593          
BLAST of EY674907 vs. ExPASy Swiss-Prot
Match: IMB2_YEAST (Importin subunit beta-2 OS=Saccharomyces cerevisiae GN=KAP104 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.514e-17
Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 3
Query:   21 YEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACS 374
            ++++    P ++  L   G + W  REA +LALGA+AEG +K     L  ++ FL+  L+DK+  +R ++CWTLSRFS +I+QD       E    VL  ++  ++D  K VQEAA S
Sbjct:  416 HQVMDIAFPFLREHL---GSDRWFIREATILALGAMAEGGMKYFNDGLPALIPFLVEQLNDKWAPVRKMTCWTLSRFSPWILQD-----HTEFLIPVLEPIINTLMDKKKDVQEAAIS 525          

HSP 2 Score: 31.5722 bits (70), Expect = 3.514e-17
Identity = 20/55 (36.36%), Postives = 29/55 (52.73%), Query Frame = 1
Query:  436 YSTL*WLFGK----YQRRNLRIVYDAIGTLADAVGIQTKPTLFIFEILMPPFIGK 588
            YS L   F K    Y+++NL I+YDAIG  A+   +         +I++PP I K
Sbjct:  544 YSQLLTSFDKCLKYYKKKNLIILYDAIGRFAEKCALDET----AMQIILPPLIEK 594          
The following BLAST results are available for this feature:
BLAST of EY674907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TNPO2_HUMAN9.792e-3342.86Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3[more]
TNPO2_MOUSE9.794e-3342.86Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1[more]
TNPO_DICDI2.162e-3242.21Transportin OS=Dictyostelium discoideum GN=tnpo PE... [more]
TNPO1_MOUSE2.163e-3242.18Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2[more]
TNPO1_HUMAN2.163e-3242.18Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2[more]
TNPO1_BOVIN2.163e-3242.18Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2[more]
IMB2_SCHPO2.069e-2939.73Importin subunit beta-2 OS=Schizosaccharomyces pom... [more]
IMB2_YEAST3.514e-1738.14Importin subunit beta-2 OS=Saccharomyces cerevisia... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-H12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674907 ID=EY674907; Name=EY674907; organism=Citrus sinensis; type=EST; length=952bp
CCTCTCAAATGTTTTCCGTTTATGAGATTCTTCCAACTTTGATGCCTGTT
ATTCAGGCTAAGTTGTCTGCCAGTGGTGATGAAGCCTGGAAAGACAGGGA
AGCTGCTGTTTTGGCTCTTGGTGCTATAGCTGAAGGTTGCATTAAAGGGC
TTTATCCTCATCTATCTGAGATTGTGGCATTTCTTATCCCTCTTTTAGAT
GATAAGTTTCCTTTGATACGAAGTATTTCTTGTTGGACCCTTTCTCGATT
CAGCAAATTTATTGTGCAGGACATCGGCCACCAGAATGGTCGTGAACAAT
TTGAGAAGGTCCTTATGGGCCTTTTAAAGAGAATACTGGATACCAACAAG
CGGGTGCAAGAGGCTGCTTGTTCTGCGTTTGCGACACTTGAAGAGGAGGC
TGCAGAAGAGTTAGCACCACGTTTAAAAATAATCTTACAGCACCTTATGA
TGGCTTTTTGGAAAATATCAGAGACGGAACCTCAGAATTGTATATGATGC
TATTGGAACTCTGGCTGATGCTGTTGGGATTCAAACTAAACCAACCCTGT
TTATCTTTGAAATTTTGATGCCACCTTTTATTGGCAAAATGGGCACCTGG
CTTTCCCAAATTCAAAAAAAAAATCTCCTTTCCCCTGGCTTGGATGGTTT
TAACTACCAAAACCAAAGGGCTTTGGGGCCTGGGTTTCCTTCATTTTTGC
TCGGCCCGGGATTACAAAAGGTTAAATTCGATTGGACCCTTGGAGCCTCA
TTTTAAAAAAAAAAAGTTGGATTTTATTCTCGTCCCCCGATCCGACTTTA
TGGGAAATTCGAGAGAGAGGGCATGGGTGATGGGGGATTCAAAAGTTTTT
GTGGGTAACATAAAATAAATTAAAAGAGGAAAATTTCTTATCGACTTTTA
GGTAATTTGAGGTATAAAAGTTTCTTATAAAAAGATCAAAGAAAATAACC
GA
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