EY674785

Overview
NameEY674785
Unique NameEY674785
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1014
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674785 vs. ExPASy Swiss-Prot
Match: M860_ARATH (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.024e-14
Identity = 30/67 (44.78%), Postives = 45/67 (67.16%), Query Frame = -2
Query:  180 PTNVTEIRSFLGLAGYYRRFVDGFSRLAAPLTRLIRKNAKFEWSDECEKSFQELKKMLVSAPVLTVP 380
            P N TE+R FLGL GYYRRFV  + ++  PLT L++KN+  +W++    +F+ LK  + + PVL +P
Sbjct:   60 PKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPVLALP 125          

HSP 2 Score: 33.4982 bits (75), Expect = 1.024e-14
Identity = 13/28 (46.43%), Postives = 21/28 (75.00%), Query Frame = -1
Query:  388 IVFLGH--VVTKDGIFVDPAKIEAVVNW 465
            I +LGH  +++ +G+  DPAK+EA+V W
Sbjct:   30 IAYLGHRHIISGEGVSADPAKLEAMVGW 57          
BLAST of EY674785 vs. ExPASy Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.888e-13
Identity = 28/68 (41.18%), Postives = 48/68 (70.59%), Query Frame = -2
Query:  180 PTNVTEIRSFLGLAGYYRRFVDGFSRLAAPLTRLIRKNAKFEWSD-ECEKSFQELKKMLVSAPVLTVP 380
            PT   EI++FLGL GYYR+F+  F+ +A P+T+ ++KN K + ++ E + +F++LK ++   P+L VP
Sbjct:  436 PTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVP 503          

HSP 2 Score: 32.3426 bits (72), Expect = 2.888e-13
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = -1
Query:  397 FLGHVVTKDGIFVDPAKIEAV 459
            FLGHV+T DGI  +P KIEA+
Sbjct:  410 FLGHVLTPDGIKPNPEKIEAI 430          
BLAST of EY674785 vs. ExPASy Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 3.031e-12
Identity = 26/68 (38.24%), Postives = 45/68 (66.18%), Query Frame = -2
Query:  180 PTNVTEIRSFLGLAGYYRRFVDGFSRLAAPLTRLIRKNAKFEWSD-ECEKSFQELKKMLVSAPVLTVP 380
            PT   EIR+FLGL GYYR+F+  ++ +A P+T  ++K  K +    E  ++F++LK +++  P+L +P
Sbjct:  435 PTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLP 502          

HSP 2 Score: 33.8834 bits (76), Expect = 3.031e-12
Identity = 13/24 (54.17%), Postives = 20/24 (83.33%), Query Frame = -1
Query:  388 FLGHVVTKDGIFVDPAKIEAVVNW 459
            FLGH+VT DGI  +P K++A+V++
Sbjct:  409 FLGHIVTPDGIKPNPIKVKAIVSY 432          
The following BLAST results are available for this feature:
BLAST of EY674785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
M860_ARATH1.024e-1444.78Uncharacterized mitochondrial protein AtMg00860 OS... [more]
POL3_DROME2.888e-1341.18Retrovirus-related Pol polyprotein from transposon... [more]
POL2_DROME3.031e-1238.24Retrovirus-related Pol polyprotein from transposon... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-001-D06-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674785 ID=EY674785; Name=EY674785; organism=Citrus sinensis; type=EST; length=1014bp
CCACGCGTCCGCCCACGCGTCCGCCCACCCCTTCGCCCACGCGTCCGCGA
ATGGTGAACAGAGGAGGGCCCTCAGCAGGGATATATATATATATATGTAA
TGGTGCTAACAACTCTGGTTAGTAATTATAATTTGTATACGCTTTCCTTC
TCGTTTGCTCTCTCTCTACTACCGCTAGAAGGAACTGTCAAGACAGGAGC
AGAAACCAACATTTTCTTCAACTCCTGAAAGCTTTTCTCACATTCATCAC
TCCATTCAAACTTCGCATTCTTTCTGATCAATCTTGTTAATGGGGCTGCG
AGTCTAGAGAACCCATCCACAAATCTTCTGTAATAACCAGCTAAACCTAG
GAAGCTCCTGATCTCAGTAACATTAGTTGGTNCTTGACCAATTCACCACA
GCCTCAATCTTGGCTGGATCAACAAAAATGCCATCTTTAGTAACAACATG
CCCCAAAAAGACTATGTAATCATCAAGATTAATGAAGGGATATATATGTA
ATGGTGCTAATAACTCTGGTTAGTAATTATAATTTGTATACGCTTTCCTT
CCCGTTTGCTCTCTCTCTACTCCTTCTTCATTAATTTAAACAAGGTCCAT
TTAAATTAAAATAATTTGTCCTAAACTGATTCATTTTGTTTTGTTTGGGA
AAAGCCAAATTTTTTCACCCAAAAAAGAAATTTACAAAATGGGCGCCCCA
AAACAGGGAATTGGGGGGAAAGGGCGCCGGGCCGGGGTTTTTTTAAATCT
GTTATGTTAAGTTTTTCAAAAAATTCCTTTTTGTTTTTTTTGGGAAACCC
CTTTTTTTTTGTAAAAAAAAAAAAAATAAAAAAAAAAAACCCACAAACAA
AAAAAAGAGCTTTTTGGGGGGGGGCCAAACCCCCGGGGGGGGAAATTGAA
TGTTATTTTTTATTTTTTTTTTTTTTTTTTTTTATCCCCTCATTTAAAAA
ACAACAATTTATTAATATTTTTTTTTAGACCAACTTTTTTTTTATTTATT
TTATTTAAAAAATT
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