EY679426

Overview
NameEY679426
Unique NameEY679426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY679426 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.348e-11
Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = 3 
Query:   96 MARLLAQLTNAPALVPGGRHFQSQNAGKSRRNVKMMSYMQPSASRINSFSGLRRSNALDTFT---CDFHSTVAVSLSSRRGKSGRHDGIVVKALLEHIHKQNI 395
            MAR+LAQ  + P LV G +  Q + +GKS+R+VK M  ++ S  R++ FSGLR  N L+T      DFHS V+ ++SSRR ++ R    + +A+ E   ++ I
Sbjct:    1 MARVLAQSLSVPGLVAGHKDSQHKGSGKSKRSVKTMCALRTSGLRMSGFSGLRTFNHLNTMMRPGLDFHSKVSKAVSSRRARAKR---FIPRAMFERFTEKAI 100
The following BLAST results are available for this feature:
BLAST of EY679426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CLPC_PEA4.348e-1139.81ATP-dependent Clp protease ATP-binding subunit clp... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-057-A11-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679426 ID=EY679426; Name=EY679426; organism=Citrus sinensis; type=EST; length=897bp
CATTTTTTTTTTGCCCTTTTTCTCTTTTCTGTTTTAATTTTTATTTATCA
AAGCAAACGCCTTTGCTTTTTTCTCTCTAATATCTAGATTAAATCATGGC
TAGGCTTCTGGCTCAGTTAACTAATGCCCCTGCTTTGGTTCCTGGCGGAA
GACATTTCCAGTCCCAAAATGCTGGAAAATCAAGAAGGAATGTCAAAATG
ATGTCTTATATGCAGCCGTCTGCTTCAAGAATTAATAGTTTCTCAGGATT
GCGACGCTCCAATGCTTTAGATACATTCACCTGTGATTTCCATTCCACGG
TGGCTGTTTCACTCTCTTCTAGACGAGGAAAGTCTGGAAGACATGATGGA
ATTGTTGTTAAAGCTCTGCTTGAACACATACACAAACAAAACATATGAAG
TGTTTATGCTTGGCTGAGGACTAACTAAAACGTCTTGTCCCCCAAATATT
ATAGCATCTGACAAATTCAATCGATGCCTCAAGCTAAAAGGTCTGTTCTC
AGGTGATACAAGACACCACAATCATGCAAATAACATCGTAATAATGCCCA
TGATTATACCTAAAACCATAATTGGAACGGTATTTGTCTATAAGAATATA
GAGAATCTCACAAGTCCCCTGTGTAGCAACCTAGAATATAGAGCCCCCTA
CATTGGAGAGAGGACTATAGAACGGGGAGACAAAATGTTTACTAAAAGAA
AAGATTAATATACAAATCATTAATAATATTTAAAATATAAATTTCATCAT
TAAATTTAATTGAACAAGAACTAAAACTGAAATCCAGAAAAAGTAGTACT
ATAATCTTCAAACTACAACATGTCCAAACTTCTTTCTACCTATAACCTTA
CATCTCTTTTTACATACATGATATCTTTACAGATATATTCTCCTGAT
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