EY674780

Overview
NameEY674780
Unique NameEY674780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length964
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674780 vs. ExPASy Swiss-Prot
Match: WRKY4_ARATH (Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 9.109e-26
Identity = 89/226 (39.38%), Postives = 116/226 (51.33%), Query Frame = 1
Query:   76 GLSPGPMTLVSSFFAEDLNNQSFSQLLAGAMASP-----LASKQAHSFLVXXXXXXXXXXXXXXXXFKENKPTSLMIAMS---PLFTVPPGLSPSGLLNSP---GFFSP-QSPFGMAHMHALATVTAQAFLAQSSMHMQAEYPPSLLSAPKKVLDFYSISHSP*TF*KVKAHSNSSPHCL*MKQRRSSFRGGKLCLPSALHKPPEEG*NGANFGSKQLKATRVLQS 717
            G SPGPMTLVS+ F +    +SFSQLLAGAM+SP      A+    S                   FK+N+PT LMI+ S    +FTVPPGLSP+ LL+SP   G FSP Q  +GM H  ALA VTAQA  A ++M  Q EYPP     P +V  F S      T   + A   +S   + + + RS         P  + KP ++G N   +G KQ+K +   +S
Sbjct:   39 GFSPGPMTLVSNMFPDSDEFRSFSQLLAGAMSSPATAAAAAAAATASDYQRLGEGTNSSSGDVDPRFKQNRPTGLMISQSQSPSMFTVPPGLSPAMLLDSPSFLGLFSPVQGSYGMTHQQALAQVTAQAVQANANMQPQTEYPP-----PSQVQSFSSGQAQIPTSAPLPAQRETSD--VTIIEHRSQ-------QPLNVDKPADDGYNWRKYGQKQVKGSEFPRS 250          
BLAST of EY674780 vs. ExPASy Swiss-Prot
Match: WRKY3_ARATH (Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.244e-24
Identity = 88/234 (37.61%), Postives = 117/234 (50.00%), Query Frame = 1
Query:   76 GLSPGPMTLVSSFFAEDLNNQSFSQLLAGAMASPLASKQA---------HSFLVXXXXXXXXXXXXXXXXFKENKPTSLMIAMSP-LFTVPPGLSPSGLLNSPGFFSPQSP----FGMAHMHALATVTAQAFLAQSSMHM----QAEYPPSLLSAPKK-----VLDFYSISHSP*TF*KVKAHSNSSPHCL*MKQRRSSFRG--GKLCLPSALHKPPEEG*NGANFGSKQLKAT 702
            G SPGPMTLVS+ F++    +SFSQLLAGAMASP A+  A         H   V                FK+++PT LMI   P +FTVPPGLSP+ LL+SP FF   SP    FGM H  ALA VTAQA +  +++HM    Q+EYP S     ++     + +  S S +P +  +      S        QR +S          P    KP ++G N   +G KQ+K +
Sbjct:   40 GFSPGPMTLVSNLFSDPDEFKSFSQLLAGAMASPAAAAVAAAAVVATAHHQTPVSSVGDGGGSGGDVDPRFKQSRPTGLMITQPPGMFTVPPGLSPATLLDSPSFFGLFSPLQGTFGMTHQQALAQVTAQA-VQGNNVHMQQSQQSEYPSSTQQQQQQQQQASLTEIPSFSSAPRSQIRASVQETS------QGQRETSEISVFEHRSQPQNADKPADDGYNWRKYGQKQVKGS 266          
The following BLAST results are available for this feature:
BLAST of EY674780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
WRKY4_ARATH9.109e-2639.38Probable WRKY transcription factor 4 OS=Arabidopsi... [more]
WRKY3_ARATH2.244e-2437.61Probable WRKY transcription factor 3 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-001-D01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674780 ID=EY674780; Name=EY674780; organism=Citrus sinensis; type=EST; length=964bp
CCACGCGTCCGCGGACGCGTGGGCAACCCCTCATTCTCCCTCCTCGTCCT
TCAATGGAGTCTTTATATGCGGTCTGGTTTGAGCCCTGGACCCATGACTC
TGGTGTCTAGCTTCTTTGCTGAGGACTTGAACAATCAATCTTTCTCTCAG
CTTCTTGCTGGAGCCATGGCTTCTCCATTGGCATCTAAGCAAGCTCATAG
CTTTTTGGTTGATTACAGTAAAGATGGGGATGGAGATGGGGACCACAAGA
GTTATGGTTTTAAAGAGAATAAGCCAACAAGTTTGATGATTGCGATGTCT
CCATTGTTTACTGTTCCTCCTGGGTTAAGCCCTTCTGGGTTGCTTAATTC
ACCTGGCTTCTTTTCACCTCAGAGCCCATTTGGAATGGCCCACATGCATG
CGTTGGCTACAGTTACAGCACAGGCTTTCCTAGCTCAATCAAGTATGCAC
ATGCAAGCTGAATATCCACCTTCATTGTTATCAGCTCCAAAAAAAGTCCT
TGACTTTTATTCAATCAGTCACTCCCCATGAACCTTCTAGAAGGTGAAAG
CACATTCCAACTCATCCCCCCATTGTTTATAAATGAAACAAAGGAGGTCT
TCATTTAGAGGGGGAAAATTATGCCTTCCTTCTGCTTTACATAAACCCCC
TGAAGAGGGCTAAAATGGCGCTAATTTTGGGTCGAAGCAACTAAAGGCAA
CGAGAGTCCTGCAGAGCATTCCGTGGGCCCAGGGGGATGGCGTTGGCGAT
AAAAGGGTTTGCTTCGTCCTGTGGCGCAGGAATCGTTTTTTTGTTCTGAG
AACAGAAAGTAATGAAGAGCGCTTAGTAAAGATAGTGAGAAAAAATCTGA
TGAGGACAAGAAAAATAAAGATATTGGGGGAACGCCGAGAATTGACTACT
GGGAACTAATACACATGGGAACTTTTCAGAATGAAGGAGAGGGTTTCAGA
GAAAAGCCTCCTTT
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