FC922224

Overview
NameFC922224
Unique NameFC922224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC922224 vs. ExPASy Swiss-Prot
Match: IPT5_ARATH (Adenylate isopentenyltransferase 5, chloroplastic OS=Arabidopsis thaliana GN=IPT5 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.235e-36
Identity = 77/127 (60.63%), Postives = 97/127 (76.38%), Query Frame = 1
Query:    1 VELGLVEEVKQMFDPQA-DYSRGIRRAIGVPELDQYIRAGSL-LDHKIRAKLLEAAINKIKENTCNLSCRQLQKIHRLNDVWNWNIHRIDATEVFLKRGEEADEAWEKLVMLPSTMTVRQFL-YDED 372
            VE+GLV+EV+++FDP + DYS GIRRAIGVPELD+++R+       +   +LLE AI KIKENTC L+CRQLQKI RL   W WN+HR+DATEVFL+RGEEADEAW+  V  PS + V +FL Y +D
Sbjct:  176 VEMGLVDEVRRIFDPSSSDYSAGIRRAIGVPELDEFLRSEMRNYPAETTERLLETAIEKIKENTCLLACRQLQKIQRLYKQWKWNMHRVDATEVFLRRGEEADEAWDNSVAHPSALAVEKFLSYSDD 302          
BLAST of FC922224 vs. ExPASy Swiss-Prot
Match: IPT7_ARATH (Adenylate isopentenyltransferase 7, mitochondrial OS=Arabidopsis thaliana GN=IPT7 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.834e-32
Identity = 68/127 (53.54%), Postives = 96/127 (75.59%), Query Frame = 1
Query:    1 VELGLVEEVKQMFDPQADYSRGIRRAIGVPELDQYIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQLQKIHRLNDVWNWNIHRIDATEVFLKRG-EEADEAWEKLVMLPSTMTVRQFLYDEDRV 378
            +E GL+EEV+++F+P+A+YS GIRRAIGVPEL +Y+R  SL+D   ++K+L+ A+  IK+NT  L+CRQL+KI RL+  W  ++HR+DATEVFLKR  EE DEAWE LV  PS   V +F  + +++
Sbjct:  178 MEAGLLEEVREVFNPKANYSVGIRRAIGVPELHEYLRNESLVDRATKSKMLDVAVKNIKKNTEILACRQLKKIQRLHKKWKMSMHRVDATEVFLKRNVEEQDEAWENLVARPSERIVDKFYNNNNQL 304          
BLAST of FC922224 vs. ExPASy Swiss-Prot
Match: IPT3_ARATH (Adenylate isopentenyltransferase 3, chloroplastic OS=Arabidopsis thaliana GN=IPT3 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.761e-26
Identity = 63/125 (50.40%), Postives = 84/125 (67.20%), Query Frame = 1
Query:    1 VELGLVEEVKQMFD-PQADYSRGIRRAIGVPELDQYIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQLQKIHRLNDVWNWNIHRIDATEVFLKRGE--EADEAWEKLVMLPSTMTVRQFLYD 366
            VE G+VEEV++ FD   +DYSRGI++AIG PE D++ R    L+ + R +LL   + +IK NT  L+CRQ +KI RL  V  W+I R+DAT VF KR    +A+ AWE+LV  PST TV +FL D
Sbjct:  184 VESGMVEEVREFFDFSNSDYSRGIKKAIGFPEFDRFFRNEQFLNVEDREELLSKVLEEIKRNTFELACRQREKIERLRKVKKWSIQRVDATPVFTKRRSKMDANVAWERLVAGPSTDTVSRFLLD 308          
BLAST of FC922224 vs. ExPASy Swiss-Prot
Match: IPT2_ARATH (tRNA isopentenyltransferase 2 OS=Arabidopsis thaliana GN=IPT2 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16
Identity = 54/151 (35.76%), Postives = 82/151 (54.30%), Query Frame = 1
Query:    1 VELGLVEEVKQMFDPQADYSRGIRRAIGVPELDQYIR-------AGSLL---------------------DHKIRAKLLEAAINKIKENTCNLSCRQLQKIHRLNDVWNWNIHRIDATEVFLKRGEEADEAWEKLVMLPSTMTVRQFLYDE 369
            V+ GL++EV  ++ P ADY+RG+R++IGV E + +++       AG L                      D K+R  +LE AI+++K NT  L  RQ +++ RL  V+ WNIH IDATE  L + E   E+W   V+ P++  +R FL  E
Sbjct:  250 VDAGLLDEVYDIYKPGADYTRGLRQSIGVREFEDFLKIHLSETCAGHLTSLSNDDKVMKENLRKILNFPKDDKLRI-MLEEAIDRVKLNTRRLLRRQKRRVSRLETVFGWNIHYIDATEYILSKSE---ESWNAQVVKPASEIIRCFLETE 396          
BLAST of FC922224 vs. ExPASy Swiss-Prot
Match: IPT_HUMLU (Adenylate isopentenyltransferase OS=Humulus lupulus PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.410e-15
Identity = 52/140 (37.14%), Postives = 76/140 (54.29%), Query Frame = 1
Query:    1 VELGLVEEVKQMFDPQAD-------YSRGIRRAIGVPELDQYI---RAGSLLDH-----KIRAKLLEAAINKIKENTCNLSCRQLQKIHRLNDVWNWNIHRIDATEVF-----LKRGEEADEAWEKLVMLPSTMTVRQFL 360
            +ELG+ +E+ + + P+ +          G+R+AIGVPE D+Y    R G +        ++R    E A+  IKENTC+L+ RQ+ KI RL     W++ R+DATE F        GE+  E WEK V+ PS   V +FL
Sbjct:  189 LELGMFDELAEFYSPEDEDHDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVEGEDPGRDRVRRGAFEEAVRAIKENTCHLAKRQIGKILRLKGA-GWDLRRLDATESFRAAMTSDSGEKCTEIWEKQVLEPSVKIVSRFL 327          
BLAST of FC922224 vs. ExPASy Swiss-Prot
Match: IPT6_ARATH (Adenylate isopentenyltransferase 6, chloroplastic OS=Arabidopsis thaliana GN=IPT6 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 46/138 (33.33%), Postives = 69/138 (50.00%), Query Frame = 1
Query:    1 VELGLVEEVKQMFDPQADYSR--GIRRAIGVPELDQYIRA-GSLLDHKI----RAKLLEAAINKIKENTCNLSCRQLQKIHRLNDVWNWNIHRIDATEVFLK---------RGEEADEAWEKLVMLPSTMTVRQFLYD 366
            +E GLVE++ +++DP  D  R  G+R+ IGV E D+Y R     +D  I    R    E  +  +KE TC L  +Q +KI +L     W I R+DAT   +           G+   E WEK ++  S   V++FL +
Sbjct:  205 IESGLVEQLAELYDPVVDSGRRLGVRKTIGVEEFDRYFRVYPKEMDKGIWDLARKAAYEETVKGMKERTCRLVKKQKEKIMKLIR-GGWEIKRLDATAAIMAELNQSTAKGEGKNGREIWEKHIVDESVEIVKKFLLE 341          
The following BLAST results are available for this feature:
BLAST of FC922224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
IPT5_ARATH3.235e-3660.63Adenylate isopentenyltransferase 5, chloroplastic ... [more]
IPT7_ARATH4.834e-3253.54Adenylate isopentenyltransferase 7, mitochondrial ... [more]
IPT3_ARATH6.761e-2650.40Adenylate isopentenyltransferase 3, chloroplastic ... [more]
IPT2_ARATH3.719e-1635.76tRNA isopentenyltransferase 2 OS=Arabidopsis thali... [more]
IPT_HUMLU2.410e-1537.14Adenylate isopentenyltransferase OS=Humulus lupulu... [more]
IPT6_ARATH8.024e-1133.33Adenylate isopentenyltransferase 6, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM2AA03RM1 SLH Citrus sinensis cDNA clone KN0AAM2AA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922224 ID=FC922224; Name=FC922224; organism=Citrus sinensis; type=EST; length=682bp
GTGGAATTGGGCCTAGTGGAGGAGGTTAAGCAAATGTTTGATCCACAAGC
TGATTACTCAAGGGGCATTAGGCGAGCCATTGGGGTGCCTGAATTGGACC
AATATATACGTGCTGGATCACTCCTAGATCATAAGATCCGTGCTAAACTT
CTCGAGGCAGCCATTAACAAAATTAAAGAAAATACATGTAACCTATCTTG
TCGCCAATTACAAAAAATTCATAGGCTCAACGACGTATGGAATTGGAACA
TCCATCGAATTGATGCCACGGAGGTGTTCTTAAAACGAGGCGAAGAAGCT
GATGAAGCGTGGGAGAAGCTCGTGATGCTACCCAGTACCATGACTGTTCG
TCAATTCCTCTACGACGAAGATCGTGTGACCACTATGCCGGAAACCGCCC
CCGCTATCGTCAACACTCCACCGGTCCCTATTCCCACCGCTGTTGCTGCC
GCAACCCGTTGAAAGAATGTTGGGACCCACATAATCTACGGCGAAATGCG
TGTGATGATGCCATGTGGCATTTTGTCACATAGCAAATTAGCCAGTTTTT
GGCACTTTCTCTTACTTTTCTCATAATTTTGAGTATGGTACATATGTGCG
CTTGCAATAAACTTCAAAATAAGAGTGTTAAATTACATTTAGAGTAATTT
ACCATCCAGTTAAGTTAAAAAAAAAAAAAAAA
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