EY680348

Overview
NameEY680348
Unique NameEY680348
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680348 vs. ExPASy Swiss-Prot
Match: NIFU2_ARATH (NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.696e-49
Identity = 112/193 (58.03%), Postives = 134/193 (69.43%), Query Frame = 1
Query:  193 MQGVVLNPT-YSR-PHQTLDSPSCSRPASKSTKSFFGERVS--LTRWRNPVRHSSCRLLLIRKRGAARRNVIKAVATPDSAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLVEKIPEIVAVESVADEETGFELNEEKKKRELGESGPILVGEQGGLLEI 759
            MQ + LNP   SR P Q +D  S S       +    +R    + R  NP+R    R L  R+    R  V+KAVATPD  +E+PLT EN+ESVLDEIRPYL+SDGGNVALHEIDGN+VR+KLQGACGSCPSS MTMKMGIERRL+EKIPEIVAVE++ DEETG ELNEE  ++ L E  P L+G   G L++
Sbjct:    1 MQLLTLNPAAISRTPPQAIDPSSSSSLLLPFPQILSSQRALGLVARPCNPLRRGLSRFLSSRQL-FRRSKVVKAVATPDPILEVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDL 192          
BLAST of EY680348 vs. ExPASy Swiss-Prot
Match: NIFU1_ORYSJ (NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.991e-39
Identity = 93/180 (51.67%), Postives = 119/180 (66.11%), Query Frame = 1
Query:  235 QTLDSPSCSRPA---SKSTKSFFGERVSLTRWRNPVRHSSCRLLLIRKRGAARRN-VIKAVA--TPDSAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLVEKIPEIVAVESVADEETGFELNEEKKKRELGESGPILVGEQGGLLE 756
            QT   P  +  A   S +T S    +V+   W +    SS    L+      R   V+ A+A   P +A++LPLTA N+ESVLD++RPYL +DGG+VALHEI GNVVRLKLQGACGSCPSS++T+K GIERRL+EKIP++ AVE V D+ETG ELNEE  ++ L E  P L G  GG L+
Sbjct:    2 QTTTVPMAAAAAVAPSTTTSSSASFKVAAYAWSSCRSSSSPATRLVAAPNHQRPPLVVGAIAGLDPVTAVQLPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIERRLMEKIPDVAAVEPVTDKETGLELNEENVEKVLNEIRPYLAGTGGGGLQ 181          

HSP 2 Score: 22.7126 bits (47), Expect = 2.991e-39
Identity = 9/20 (45.00%), Postives = 14/20 (70.00%), Query Frame = 3
Query:  768 LKNPKIKVQI*GPAPGIRNV 827
            +K P +KV++ GPA  +R V
Sbjct:  185 IKGPIVKVRLTGPAAVVRTV 204          
BLAST of EY680348 vs. ExPASy Swiss-Prot
Match: NIFU3_ARATH (NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.994e-32
Identity = 72/111 (64.86%), Postives = 86/111 (77.48%), Query Frame = 1
Query:  430 LPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLVEKIPEIVAVESVADEET-GFELNEEKKKRELGESGPILVGEQGGLLEI 759
            +PLT EN+E VLDE+RP L++DGGNVALHEIDG VV LKLQGACGSCPSS MT+KMGIE RL +KIPEI++VE   + ET G ELN+E  ++ L E  P L G  GG LE+
Sbjct:   82 MPLTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRLRDKIPEIMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLEL 192          
BLAST of EY680348 vs. ExPASy Swiss-Prot
Match: YUTI_BACSU (Putative nitrogen fixation protein yutI OS=Bacillus subtilis GN=yutI PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.801e-16
Identity = 37/70 (52.86%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  445 ENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLVEKIPEIVAVESV 654
            E ++ VLD++RP+L+ DGG+  L ++D  +V+L+L GACGSCPSS +T+K GIER L+E++P +V VE V
Sbjct:   41 EQVQEVLDKLRPFLLRDGGDCELVDVDEGIVKLRLLGACGSCPSSTITLKAGIERALLEEVPGVVEVEQV 110          
BLAST of EY680348 vs. ExPASy Swiss-Prot
Match: NIFU1_ARATH (NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.012e-16
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 1
Query:  418 SAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLVEKIPEIVA-VESVADEE 666
            SA    LT +N++ VL+++RP+LISDGGNV +  ++  VV LKLQGAC SCPSS  TM MGIER L EK  + +  +  V DEE
Sbjct:   79 SAQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVLKEKFGDALKDIRQVFDEE 162          
BLAST of EY680348 vs. ExPASy Swiss-Prot
Match: NIFU_ANASL (Nitrogen fixation protein nifU (Fragment) OS=Anabaena sp. (strain L31) GN=nifU PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.686e-14
Identity = 38/69 (55.07%), Postives = 55/69 (79.71%), Query Frame = 1
Query:  451 IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLVEKIPEIVAVESV 654
            I+ VLDE +RP LI+DGG+V L+++DG++V++ LQGACGSCPSS  T+K+ IE RL ++I   + VE+V
Sbjct:   44 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCPSSTATLKIAIESRLRDRINPSLVVEAV 112          
BLAST of EY680348 vs. ExPASy Swiss-Prot
Match: NIFU_ANASP (Nitrogen fixation protein nifU OS=Anabaena sp. (strain PCC 7120) GN=nifU PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.875e-14
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 1
Query:  397 KAVATPDSAIELPLTAEN----IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLVEKIPEIVAVESV 654
            K    P+S  + PLT       I+ VLDE +RP LI+DGG+V L+++DG++V++ LQGACGSC SS  T+K+ IE RL ++I   + VE+V
Sbjct:  210 KPTNIPNSGQKRPLTNVQKIALIQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRINPSLVVEAV 300          
BLAST of EY680348 vs. ExPASy Swiss-Prot
Match: NIFU_ANAAZ (Nitrogen fixation protein nifU OS=Anabaena azollae GN=nifU PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.875e-14
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 1
Query:  397 KAVATPDSAIELPLTAEN----IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLVEKIPEIVAVESV 654
            K    P+S  + PLT       I+ VLDE +RP LI+DGG+V L+++DG++V++ LQGACGSC SS  T+K+ IE RL ++I   + VE+V
Sbjct:  210 KPTNIPNSGQKRPLTNVQKIALIQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRINPSLVVEAV 300          
BLAST of EY680348 vs. ExPASy Swiss-Prot
Match: NFU1_DROWI (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila willistoni GN=GK25604 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.208e-12
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  439 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLVEKIPEIVAVESVADE-----ETGFELNEEK-KKRELGESGPILVG 735
            T   I+ +LD  IRP +  DGG++     D  VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V DE     +  FE  E   K+++   + P+ +G
Sbjct:  179 TVMMIKELLDTRIRPTVQEDGGDIVFMSYDNGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDEADKMADKEFERFERNLKQKDTSSTAPVGIG 284          
BLAST of EY680348 vs. ExPASy Swiss-Prot
Match: NFU1_DROME (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila melanogaster GN=CG32500 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.061e-12
Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = 1
Query:  439 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLVEKIPEIVAVESVADE-----ETGFELNEEK----KKRELGESGP 723
            T   I+ +LD  IRP +  DGG++     +G VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V DE     E+ FE  E+     K++E    GP
Sbjct:  178 TVMMIKELLDTRIRPTVQEDGGDIVFMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDEADRMIESEFERFEKNLKTLKQQEPSGGGP 282          
The following BLAST results are available for this feature:
BLAST of EY680348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
NIFU2_ARATH4.696e-4958.03NifU-like protein 2, chloroplastic OS=Arabidopsis ... [more]
NIFU1_ORYSJ2.991e-3951.67NifU-like protein 1, chloroplastic OS=Oryza sativa... [more]
NIFU3_ARATH3.994e-3264.86NifU-like protein 3, chloroplastic OS=Arabidopsis ... [more]
YUTI_BACSU1.801e-1652.86Putative nitrogen fixation protein yutI OS=Bacillu... [more]
NIFU1_ARATH4.012e-1653.57NifU-like protein 1, chloroplastic OS=Arabidopsis ... [more]
NIFU_ANASL1.686e-1455.07Nitrogen fixation protein nifU (Fragment) OS=Anaba... [more]
NIFU_ANASP2.875e-1447.25Nitrogen fixation protein nifU OS=Anabaena sp. (st... [more]
NIFU_ANAAZ2.875e-1447.25Nitrogen fixation protein nifU OS=Anabaena azollae... [more]
NFU1_DROWI1.208e-1238.68NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROME2.061e-1240.95NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-010-B04-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680348 ID=EY680348; Name=EY680348; organism=Citrus sinensis; type=EST; length=832bp
AAAGCGCGCAAAAAAAAAAAAAAAAAGACAACAAAGACTGCGCCAACCGC
CCGCGACCCCGCGTAACGAAAGCAAAATAAAACAGAAACACAGATCGATT
CAATTAATCGTTAAACCATCAATTTTTATCAAATCGAATCCCCTGAAAGG
AAAAAAAAAAAAGTATACACCCGAAGAAATACAAAGAGAAAGATGCAAGG
CGTTGTGTTGAACCCAACTTACAGTCGCCCTCACCAAACCCTAGACTCTC
CTTCTTGTTCTCGTCCTGCCTCTAAGAGTACTAAAAGTTTCTTTGGAGAA
CGAGTTTCGCTTACGAGGTGGCGGAATCCGGTGCGTCACAGCTCGTGTCG
GTTACTGCTGATTCGGAAGCGTGGGGCCGCGCGAAGGAACGTCATAAAGG
CTGTGGCTACTCCTGATTCAGCTATTGAGTTACCTTTAACTGCTGAGAAT
ATTGAAAGTGTATTGGATGAAATTCGACCATATCTTATATCAGATGGGGG
AAATGTGGCATTACATGAGATTGATGGCAATGTTGTACGATTGAAGCTAC
AGGGAGCATGTGGGTCTTGTCCCAGTTCTGTTATGACGATGAAGATGGGT
ATTGAGCGTCGCTTAGTGGAGAAGATCCCCGAGATAGTTGCAGTGGAATC
GGTAGCAGATGAAGAAACTGGGTTTGAACTGAATGAAGAAAAAAAAAAAA
GGGAATTGGGGGAATCGGGCCCTATCTTGGTGGGGGAGCAGGGTGGATTA
CTTGAAATTGGGGGCAATTGAAGAACCCAAAAATAAAAGTCCAAATTTAG
GGCCCGGCACCGGGGATCAGGAATGTTCCGGG
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