EY673887

Overview
NameEY673887
Unique NameEY673887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length976
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY673887 vs. ExPASy Swiss-Prot
Match: FBK28_ARATH (F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.880e-19
Identity = 48/93 (51.61%), Postives = 59/93 (63.44%), Query Frame = 3 
Query:  378 VAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKXXXXXXXXXXXXTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKAGVGGVCDYGK 656
            VAK  LALVPR+ FP+MG+VCKKWR  ++SKEFITVR+            TM+  GK ++WEV+DC G +   LP MPGP K G   V   GK
Sbjct:   47 VAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAGMLEEWLYVLTMNAGGKDNRWEVMDCLGQKLSSLPPMPGPAKTGFKVVVVDGK 139
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BLAST of EY673887 vs. ExPASy Swiss-Prot
Match: FBK16_ARATH (Putative F-box/kelch-repeat protein At1g27420 OS=Arabidopsis thaliana GN=At1g27420 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.924e-11
Identity = 36/94 (38.30%), Postives = 50/94 (53.19%), Query Frame = 3 
Query:  378 VAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKXXXXXXXXXXXXTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKAGVG-GVCDYGK 656
            VA+  ++ +PRS+F     VC++WRSF+RS+ F  VRK                 G+   WEV D  GN+   +P +PGP+K G G  V D GK
Sbjct:   18 VAELCVSKIPRSSFQITSQVCRRWRSFLRSQHFAAVRKLTGTVEEFLCVLMESECGRDVYWEVFDASGNKLGQIPPVPGPLKRGFGVAVLDGGK 111
The following BLAST results are available for this feature:
BLAST of EY673887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FBK28_ARATH2.880e-1951.61F-box/kelch-repeat protein At1g67480 OS=Arabidopsi... [more]
FBK16_ARATH4.924e-1138.30Putative F-box/kelch-repeat protein At1g27420 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-004-D03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY673887 ID=EY673887; Name=EY673887; organism=Citrus sinensis; type=EST; length=976bp
CCAATTTATAACCCCTTCGCATTTGTCGCCTCAAACCTCCTATATTCTGA
AACTTAGGGGCCTCATTGAAATGGAGGTCAAAGGAGGCTAGTGCTTGCTA
AGTTCTATGGCCTTGACTGGTATCTGGCAAATGTGTGGCAGGAGAGACAG
TGTTAAGGGACTGGAAAATACTCTGCATAGAACGATAGGAAGAAACTACT
TCAAAAGAAAAATTTCTGTCATGGAGTATGCGTCAGACTGGACAAAACAC
AGAAAATCCTTGGCTTTTACTGGACATGTGATTCGTTCCACTACATCTTC
TATGCCTTGGTCTTGTGAAATTATTATAGGTTGCTTTTGATCTTGACAGC
CCCCTGTTACCGGGGCTACCAGATGATGTGGCTAAATGTATCCTTGCACT
TGTTCCCCGTTCCAATTTCCCAGCTATGGGCACTGTCTGCAAGAAATGGA
GGTCATTTATACGAAGCAAAGAATTCATCACTGTCCGAAAATTACTTGGG
TTGTTAGAGGAATGGCTTTGTATCTTAACTATGGATCCTGAAGGAAAGCA
AAGCCAGTGGGAGGTGTTGGATTGTTTTGGGAACCGACATCGCCTTCTTC
CACTTATGCCTGGTCCTGTGAAGGCTGGGGTTGGGGGTGTTTGTGATTAT
GGGAAACCTTGTTGTCCAGGGCTGGTTATTCAGTGATTTGACGGGACGGC
CTCCGCCCTCACCAAAAGTTTTTCAAATATGATTCTTGGCCCAAAAAATT
GGAAACAATTTTGGAAAAATGAAACGTTTCCCCGTTAAGAATTTTGTTTG
GGCGGAAGGGGAAAGGGAAAAATTTTTTGCCGTTTGAAGGGTTTGGGAAG
GGGAGGGGAAAAAGGCCCCCCCCGGGGGTGGGGGTTTTATAAATCCCGAA
AACATGAAAAAGGGGGAAATTTTTGTTTATGGAAAACTCTCCCCCCCACC
CCCCCCGGGGGGGGGGTGTTGTTTTT
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