EY653256

Overview
NameEY653256
Unique NameEY653256
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY653256 vs. ExPASy Swiss-Prot
Match: CI085_HUMAN (Uncharacterized protein C9orf85 OS=Homo sapiens GN=C9orf85 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.777e-18
Identity = 43/110 (39.09%), Postives = 66/110 (60.00%), Query Frame = 1 
Query:   34 TMSSNSSRRGAPKHQNRYAWK-PKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVI 360
            +   N +R    KHQN +++K  K  + +  +++  KL       GVC RCK+ ++W+ +Y KYKPLS+P KC +C ++ V+ +YH +C  CA E  VCAKC  + D VI
Sbjct:    3 SQKGNVARSRPQKHQNTFSFKNDKFDKSVQTKKINAKLHD-----GVCQRCKEVLEWRVKYSKYKPLSKPKKCVKCLQKTVKDSYHIMCRPCACELEVCAKCGKKEDIVI 107
[Close]
BLAST of EY653256 vs. ExPASy Swiss-Prot
Match: CI085_MOUSE (Uncharacterized protein C9orf85 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.751e-18
Identity = 42/110 (38.18%), Postives = 65/110 (59.09%), Query Frame = 1 
Query:   34 TMSSNSSRRGAPKHQNRYAWK-PKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVI 360
            +   N +R    KHQN + +K  K  + +  +++  KL       GVC RCK+ ++W+ +Y KYKPLS+P KC +C ++ V+ +YH +C  CA E  VCAKC  + + VI
Sbjct:    3 SQKGNVTRSRPQKHQNTFTFKNDKFDKSVQTKKINAKLHD-----GVCQRCKEVLEWRVKYSKYKPLSKPKKCVKCLQKTVKDSYHIMCRPCACELEVCAKCGKKEEIVI 107
[Close]
BLAST of EY653256 vs. ExPASy Swiss-Prot
Match: CI085_RAT (Uncharacterized protein C9orf85 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.350e-17
Identity = 41/110 (37.27%), Postives = 64/110 (58.18%), Query Frame = 1 
Query:   34 TMSSNSSRRGAPKHQNRYAWK-PKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVI 360
            +   N +R    KHQN + +K  K  + +  +++  KL       GVC RCK+ ++W+ +Y KYKPLS+P KC +C ++ V+ +YH +C  CA +  VCAKC    + VI
Sbjct:    3 SQKGNVTRSRPQKHQNTFTFKNDKFDKSVQTKKINAKLHD-----GVCQRCKEVLEWRVKYSKYKPLSKPKKCVKCLQKTVKDSYHIMCRPCACKLEVCAKCGKEEEIVI 107
The following BLAST results are available for this feature:
BLAST of EY653256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CI085_HUMAN1.777e-1839.09Uncharacterized protein C9orf85 OS=Homo sapiens GN... [more]
CI085_MOUSE6.751e-1838.18Uncharacterized protein C9orf85 homolog OS=Mus mus... [more]
CI085_RAT3.350e-1737.27Uncharacterized protein C9orf85 homolog OS=Rattus ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-042-C11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY653256 ID=EY653256; Name=EY653256; organism=Citrus sinensis; type=EST; length=943bp
TTCGTCGACCCACGCGTCCGAAAAAAGAAGTTGACGATGAGCAGCAACAG
CAGCAGGCGTGGCGCGCCGAAGCACCAGAACCGCTACGCCTGGAAGCCGA
AAGCTGGCCAGAAGATCAATGAAAGAGAAGTTGGTGGAAAACTAAGACCC
TACCCTGAGATAACGGGAGTATGTCCTCGATGTAAAGATCAGATTGATTG
GAAACGCCGTTATGGCAAATATAAACCTCTCTCTGAGCCTGCCAAGTGTC
AACGTTGTACCAAGCGTGCCGTACGTCAAGCTTACCATAACCTCTGTCCT
GGTTGTGCGAAGGAACAAAATGTATGTGCAAAGTGTTGTTCCCGCGTGGA
TCGTGTGATTGGAAGAGACCTTGCAGAGGTAGAGGCTGAACAAAAGATGC
TTGAAGCAGTTTGTATTCACTTGCACTAAAAAATGCTCGAGAGAGAGATC
GAAGAATTCTTCTACGTGCTGTAAGCTCCTACACTGCTATTCTTGATCTA
AATATATGTGTTTCTTTTTGCCAAGTGAAGAAAAATTTCAAATGCTTTTT
CATTTTGTTTGCAATTGATCTTTACCAACTGCTTTTTTAAGGAGGCAACT
TGTCTGAATGACACAAGTCAAGCCACATTCATACTTCAATCAAAAATATA
AATGGGCCCTTTCTCAGCGATGGAATATCAAAATCATGTCCAAAAAAGTA
AATTAACCATATTGTTGATGCTAAGTTAAATTGTTGAGTTTTACTGCATT
TGAGATTTGAACTACTAGTAAAAATCAGGTAGAAGGGATATTTTGGGGTG
GTCACTTCTATTCTCGNACTTGAAATTATATATGTCTTTCTGACATCATC
TGAAACATGCATAGTAAGACAGACGTTTGNAGATTCTTTCTGAAAGTTAT
GTAGATGGACTTGAAGATTGGGGATATCTTCATTCACTGCTTT
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