EY703477

Overview
NameEY703477
Unique NameEY703477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY703477 vs. ExPASy Swiss-Prot
Match: ATL3B_ARATH (RING-H2 finger protein ATL3B OS=Arabidopsis thaliana GN=ATL3B PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 4.957e-42
Identity = 88/183 (48.09%), Postives = 111/183 (60.66%), Query Frame = 3
Query:  135 EPPGSVDPYSNMEFNPSLAIIIVGSIAALLFMGFLSIYIRHCSDSSNS-VIXXXXXXXXXXXXXXXXXLDREVIDTFPTLVYSEVKTLKVGKGALECADCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCAVCRSNMAXXXXXXXXXXXXLGSSEVDLAAQN-----DPXVAADTSQE 665
            +P  +  PY+    +P++A+I+V  IAAL FMGF SIY RHCS   ++ V                  LD  V++TFPT +YS+VKT K+GKG LECA CLNEFEDDETLRL+PKCDHVFHP CIDAWLE+H TC VCR+N+A             G +E DL  Q      +P V A   ++
Sbjct:   32 QPGPTNQPYNYGRLSPAMAVIVVILIAALFFMGFFSIYFRHCSGVPDAGVSPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLAEQVAEGESVEP--GGTEPDLELQQVVVNPEPVVTAPVPEQ 212          

HSP 2 Score: 26.1794 bits (56), Expect = 4.957e-42
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1
Query:  784 KLAAGYSTGHSLLQPGE 834
            K +  ++TGHS++QPGE
Sbjct:  234 KFSRSHTTGHSVVQPGE 250          
BLAST of EY703477 vs. ExPASy Swiss-Prot
Match: ATL5H_ARATH (RING-H2 finger protein ATL5H OS=Arabidopsis thaliana GN=ATL5H PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 5.381e-41
Identity = 80/138 (57.97%), Postives = 98/138 (71.01%), Query Frame = 3
Query:  153 DPYS-NMEFNPSLAIIIVGSIAALLFMGFLSIYIRHCSDS-SNSVIXXXXXXXXXXXXXXXXXLDREVIDTFPTLVYSEVKTLKVGKGALECADCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCAVCRSNMA 560
            DPY+ +   +P++A+++V  IAAL FMGF ++YIRHC+ +   SV                  LD E I+TFPT VYSEVKT K+GKGALECA CLNEFEDDETLRL+PKCDHVFHP CI AWL+ H TC VCR+N+A
Sbjct:   33 DPYAYSGSLSPAMAVVVVVVIAALFFMGFFTVYIRHCTGAVDGSVTPAGGARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNLA 170          
BLAST of EY703477 vs. ExPASy Swiss-Prot
Match: ATL1N_ARATH (RING-H2 finger protein ATL1N OS=Arabidopsis thaliana GN=ATL1N PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 7.044e-33
Identity = 66/131 (50.38%), Postives = 87/131 (66.41%), Query Frame = 3
Query:  174 FNPSLAIIIVGSIAALLFMGFLSIYIRHCSDSSNSVIXXXXXXXXXXXXXXXXX---LDREVIDTFPTLVYSEVKTLKVGKGALECADCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCAVCRSNM 557
            F+P++AI+++  ++   F+GF S+YIR C +    +                     LD  +I+TFPT  YS VKTL++GK ALEC+ CLNEFEDDETLRLIPKC HVFHP CIDAWL SHTTC +CR+++
Sbjct:   59 FDPTMAILMIVLVSVFFFLGFFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADL 189          
BLAST of EY703477 vs. ExPASy Swiss-Prot
Match: ATL1C_ARATH (RING-H2 finger protein ATL1C OS=Arabidopsis thaliana GN=ATL1C PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.918e-30
Identity = 65/136 (47.79%), Postives = 84/136 (61.76%), Query Frame = 3
Query:  153 DPYSNMEFNPSLAIIIVGSIAALLFMGFLSIYIRHCSDSSNSV-IXXXXXXXXXXXXXXXXXLDREVIDTFPTLVYSEVKTLKVGKGALECADCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCAVCRSNM 557
            D      F+P+ AII++  ++    +G +S+Y+R C   +  +                   LD  VI+TFPT  YS VKTL++GK ALEC  CLNEFEDDETLRLIP+C HVFHP CIDAWL S TTC +CR+N+
Sbjct:   28 DDEGRTSFSPTTAIIMIVLVSVFFALGCISVYMRRCLQHALGMDSGGGPGNWLNVRQTTEPGLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANL 163          
BLAST of EY703477 vs. ExPASy Swiss-Prot
Match: ATL4O_ARATH (RING-H2 finger protein ATL4O OS=Arabidopsis thaliana GN=ATL4O PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 2.195e-26
Identity = 59/143 (41.26%), Postives = 76/143 (53.15%), Query Frame = 3
Query:  129 SPEPPGSVDPYSNMEFNPSLAIIIVGSIAALLFMGFLSIYIRHCSDSSNSVIXXXXXXXXXXXXXXXXXLDREVIDTFPTLVYSEVKTLKVGKGALECADCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCAVCRSNM 557
            SP PP     ++     PS   +    +      G LS+YIRHC+ S+                     LD  V+++FP   YS VK  K+G   LECA CLNE ED ET+RL+P C+H+FH +CID WL SH TC VCRSN+
Sbjct:   31 SPSPPDLQTGHT-----PSKTTVFAVLVTLFFLTGLLSVYIRHCARSNPDSSTRYFRNRANDGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNL 168          
BLAST of EY703477 vs. ExPASy Swiss-Prot
Match: ATL2G_ARATH (RING-H2 finger protein ATL2G OS=Arabidopsis thaliana GN=ATL2G PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.427e-25
Identity = 60/151 (39.74%), Postives = 82/151 (54.30%), Query Frame = 3
Query:  123 QRSPEPPGSVDPYSNMEFNPSLAIIIVGSIAALLFMGFLSIYIRHC------SDSSNSVIXXXXXXXXXXXXXXXXXLDREVIDTFPTLVYSEVKTLKVGKGALECADCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCAVCRSNM 557
            Q    PPG+    +  + N  + ++I      + FM F SI+ R        S    S                   LD E I+TFPT +YSEVK +++GKG +ECA CL EFEDDETLRL+P C HVFH +C+D WL  H+TC +CR+++
Sbjct:   34 QTQTTPPGT----TKTKPNDPVVVVITVLFLVIFFMVFGSIFCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTARGLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADL 180          
BLAST of EY703477 vs. ExPASy Swiss-Prot
Match: ATL4C_ARATH (Putative RING-H2 finger protein ATL4C OS=Arabidopsis thaliana GN=ATL4C PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.577e-24
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 3
Query:  336 LDREVIDTFPTLVYSEVKTLKVGKGALECADCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCAVCRSNMA 560
            L++EVI++FPT +YSEVK LK+GKG +ECA CL+EFED ETLR +P C H FH  CID WL S +TC VCR+N++
Sbjct:   95 LEKEVIESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWSTCPVCRANLS 169          
BLAST of EY703477 vs. ExPASy Swiss-Prot
Match: ATL1H_ARATH (RING-H2 finger protein ATL1H OS=Arabidopsis thaliana GN=ATL1H PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.739e-23
Identity = 45/74 (60.81%), Postives = 60/74 (81.08%), Query Frame = 3
Query:  336 LDREVIDTFPTLVYSEVKTLKVGKGALECADCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCAVCRSNM 557
            L ++VI++FP+ +YS+VK LK+GKG +ECA CLNEFED+ETLRL+P C H FH  CID WL S +TC VCR+++
Sbjct:  100 LGKDVINSFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASL 173          
BLAST of EY703477 vs. ExPASy Swiss-Prot
Match: ATL4D_ARATH (Putative RING-H2 finger protein ATL4D OS=Arabidopsis thaliana GN=ATL4D PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.307e-22
Identity = 49/121 (40.50%), Postives = 69/121 (57.02%), Query Frame = 3
Query:  198 IVGSIAALLFMGFLSIYIRHCSDSSNSVIXXXXXXXXXXXXXXXXXLDREVIDTFPTLVYSEVKTLKVGKGALECADCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCAVCRSNMA 560
            I+G +   LF+  L +Y   C +    +                  +D++VI++FP  +YSEVK  K+G G +ECA CL EFED+E LR +P C H FH  CID WL S +TC VCR+N++
Sbjct:   49 IIGIVLLSLFLLLLVVY---CLNYGCCIEENETGGHEVLHSRVRRGIDKDVIESFPAFLYSEVKAFKIGNGGVECAICLCEFEDEEPLRWMPPCSHTFHANCIDEWLSSRSTCPVCRANLS 166          
BLAST of EY703477 vs. ExPASy Swiss-Prot
Match: ATL4B_ARATH (Putative RING-H2 finger protein ATL4B OS=Arabidopsis thaliana GN=ATL4B PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.543e-22
Identity = 42/75 (56.00%), Postives = 57/75 (76.00%), Query Frame = 3
Query:  336 LDREVIDTFPTLVYSEVKTLKVGKGALECADCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCAVCRSNMA 560
            L++E++++FP  +YSEVK LK+GKG +ECA CL+EF D ETLR +P C H FH  CID WL S +TC  CR+N++
Sbjct:   95 LEKELVESFPIFLYSEVKGLKIGKGGVECAICLSEFVDKETLRWMPPCSHTFHANCIDVWLSSQSTCPACRANLS 169          
The following BLAST results are available for this feature:
BLAST of EY703477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
ATL3B_ARATH4.957e-4248.09RING-H2 finger protein ATL3B OS=Arabidopsis thalia... [more]
ATL5H_ARATH5.381e-4157.97RING-H2 finger protein ATL5H OS=Arabidopsis thalia... [more]
ATL1N_ARATH7.044e-3350.38RING-H2 finger protein ATL1N OS=Arabidopsis thalia... [more]
ATL1C_ARATH1.918e-3047.79RING-H2 finger protein ATL1C OS=Arabidopsis thalia... [more]
ATL4O_ARATH2.195e-2641.26RING-H2 finger protein ATL4O OS=Arabidopsis thalia... [more]
ATL2G_ARATH2.427e-2539.74RING-H2 finger protein ATL2G OS=Arabidopsis thalia... [more]
ATL4C_ARATH4.577e-2462.67Putative RING-H2 finger protein ATL4C OS=Arabidops... [more]
ATL1H_ARATH1.739e-2360.81RING-H2 finger protein ATL1H OS=Arabidopsis thalia... [more]
ATL4D_ARATH7.307e-2240.50Putative RING-H2 finger protein ATL4D OS=Arabidops... [more]
ATL4B_ARATH9.543e-2256.00Putative RING-H2 finger protein ATL4B OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-020-B04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY703477 ID=EY703477; Name=EY703477; organism=Citrus sinensis; type=EST; length=908bp
CCACGCGTCCGGAATAATGGGGTCACGACTCTCACCCTACTGCGCGTAAC
ATGGGACCAGTCCCCTTTCTCTCGCAGCTCCTCATGCTCCTCGTGGCCCA
CGCGCTCCCCCTCTCGCTGGCCCAGCGCAGCCCCGAGCCCCCGGGCTCCG
TGGACCCCTACTCCAACATGGAATTCAACCCCTCACTCGCCATAATAATC
GTCGGGTCGATTGCGGCTCTGTTGTTCATGGGCTTCTTGTCCATCTACAT
TCGCCACTGCTCCGACTCCAGCAACTCCGTCATCCGCCCCGCCGGCGCCG
GAGGCAACCGCTCCAGGCGCGGCGCCGCCCGCGGCCTCGACCGCGAGGTC
ATCGACACTTTCCCGACCTTGGTGTACTCGGAGGTCAAGACGCTGAAGGT
CGGCAAAGGCGCGCTCGAGTGCGCCGACTGCCTGAACGAGTTCGAGGATG
ACGAAACGCTGCGTTTGATCCCGAAATGCGACCACGTCTTCCACCCCGAG
TGCATCGACGCCTGGCTTGAATCGCACACCACGTGTGCTGTTTGCCGCTC
GAATATGGCCTCTGAACCCGGTGAGACAACTCCTGAACCCAGTGAGCTGG
GCTCATCCGAGGTGGATCTCGCAGCCCAAAACGACCCCNCGGTAGCAGCA
GATACTTCACAAGAGACACAACCACAGCCACGAGGCTCACAACCAGCCGG
AACCTCAGGTATGAGCGTCAACTTTGGCTATCAAACGCTCAATAAGAACC
GTCCACGCGGCTCGGGGATCCGGGGAGCCACAAAAATTGGCCGCGGGCTA
CTCAACGGGGCATTCCTTGTTGCAACCAGGTGAGACACCGACCGGGTACC
TTGAAACTCCCGGTGGATGGGAGGAACATAAAGGAACCGGGAGCTGAACC
GGTCCATA
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