EY703474

Overview
NameEY703474
Unique NameEY703474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY703474 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.638e-79
Identity = 133/177 (75.14%), Postives = 154/177 (87.01%), Query Frame = 1
Query:   16 ISTTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGLYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPGV 546
            IS++ +AT NR +  QAS+ APFTGLKS+ AFP TKK NND +S+ SNGGRVQCMKVWPP GLKK+ETLSYLPPLSDEAL KEI YL+R+ WIPCLEFELE G+VYREHH SPGYYDG YWTMWKLPM+GCTD+  V+KEVGE +KEYP++F+R+IGFDN RQVQCISF+ AKPPGV
Sbjct:    4 ISSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180          
BLAST of EY703474 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.695e-76
Identity = 136/178 (76.40%), Postives = 153/178 (85.96%), Query Frame = 1
Query:   13 MISTTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGLYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPGV 546
            MIS+ TVA  +RAS AQ+SMVAPFT LKS+SAFP T+KTNNDITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR   IPCLEFELE G+VYREH+ SPGYYDG YWTMWKLPM+GC D++ VLKE+ E +K YP +F+RIIGFDNKRQVQ ISF+A KPPGV
Sbjct:    5 MISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKPPGV 182          
BLAST of EY703474 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 6.439e-76
Identity = 133/176 (75.57%), Postives = 153/176 (86.93%), Query Frame = 1
Query:   13 MISTTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGLYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 540
            MIS+ TVAT +RA+ AQA+MVAPFTGLKS++AFPAT+K+NNDITS+ASNGGRVQCMKVWPP GL+KFETLSYLPPLS E+L K+I YL+  GWIPCLEFELE  +VYRE++ SPGYYDG YW MWKLPM+GCTDAT VL E+ E  K YP S +RIIGFDNKRQVQCISF+A KPP
Sbjct:    5 MISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180          
BLAST of EY703474 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 3.196e-75
Identity = 128/175 (73.14%), Postives = 150/175 (85.71%), Query Frame = 1
Query:   13 MISTTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGLYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 537
            +IS+  V T NRAS AQA++VAPFTGLKSS+ FP TKKTNNDITSIASNGGRV CM+VWPP G KKFETLSYLPPL++E L KE+ YL+R GWIPCLEFELEKG+VYRE+H SPGYYDG YWTMW+LP++G TD++ VLKE+ + + EYP SF+RIIGFDN RQVQCISF+A  P
Sbjct:    3 LISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177          
BLAST of EY703474 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 9.298e-75
Identity = 135/179 (75.42%), Postives = 153/179 (85.47%), Query Frame = 1
Query:   13 MISTTTVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGLYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 543
            MIS+ TVAT  A+R + AQA MVAPF GLKSSSAFP T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE+ YLLR  W+PCLEFELE G+VYRE+H SPGYYDG YWTMWKLPM+GCTD++ VLKE+ E +K YP SF+RIIGFDN RQVQCISF+A KP G
Sbjct:    5 MISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of EY703474 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.586e-74
Identity = 131/177 (74.01%), Postives = 146/177 (82.49%), Query Frame = 1
Query:   13 MISTTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGLYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 543
            M+ST TVA+ NR S AQA+MVAPFTGLKS+  FP T+KTN+DITSI SNGG+VQCMKVWP  G+KKFETLSYLPPL+ E L  E+ YLLRSGWIPCLEFELE G VYREH   PGYYDG YWTMWKLPM+GCTDA  VLKE+ E+ K +P  + RIIGFDN RQVQCISFLA KPPG
Sbjct:    5 MLSTATVASINRVSPAQATMVAPFTGLKSTPVFPTTRKTNSDITSITSNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGYARIIGFDNVRQVQCISFLAYKPPG 181          
BLAST of EY703474 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.705e-74
Identity = 135/179 (75.42%), Postives = 153/179 (85.47%), Query Frame = 1
Query:   13 MISTTTVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGLYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 543
            MIS+ TVAT  A+R + AQA MVAPFTGLKSSSA P T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE+ YLLR  W+PCLEFELE G+VYRE+H SPGYYDG YWTMWKLPM+GCTD++ VLKE+ E +K YP SF+RIIGFDN RQVQCISF+A KP G
Sbjct:    5 MISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of EY703474 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.615e-74
Identity = 132/177 (74.58%), Postives = 146/177 (82.49%), Query Frame = 1
Query:   13 MISTTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGLYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 543
            M+ST  VA  NRAS AQASMVAPFTGLKS+SAFP T+KT  DITSIASNGGRVQCM+VWPP G K +ETLSYLPPL+ E L KE+ YLLR GW+PCLEFELE G VYRE+H SPGYYDG YWTMWKLPM+GCTDA  VL+E+ E+ K YP  + RIIGFDN RQVQCISFLA KP G
Sbjct:    5 MLSTAAVACINRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCYGRIIGFDNVRQVQCISFLAYKPKG 181          
BLAST of EY703474 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 8.703e-73
Identity = 125/174 (71.84%), Postives = 150/174 (86.21%), Query Frame = 1
Query:   25 TTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGLYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 543
            ++ A A R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+VYRE+H SPGYYDG YWTMWKLPM+GCTDAT VL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:    7 SSAAVATRSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY703474 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.939e-72
Identity = 125/173 (72.25%), Postives = 147/173 (84.97%), Query Frame = 1
Query:   25 TTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGLYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 543
            ++ A A R+++AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL EI YLL+SGW+PCLEFE E+G+VYREHH SPGYYDG YWTMWKLPM+GCTDAT VL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:    7 SSAAVATRSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
The following BLAST results are available for this feature:
BLAST of EY703474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS_LACSA1.638e-7975.14Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE1.695e-7676.40Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR6.439e-7675.57Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA3.196e-7573.14Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY9.298e-7575.42Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MANES1.586e-7474.01Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP2.705e-7475.42Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HEVBR4.615e-7474.58Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_SOLTU8.703e-7371.84Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS8_NICPL1.939e-7272.25Ribulose bisphosphate carboxylase small chain 8B, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-020-A11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY703474 ID=EY703474; Name=EY703474; organism=Citrus sinensis; type=EST; length=882bp
CCACGCGTCCGAATGATCTCTACGACCACCGTTGCCACCGCGAACCGCGC
CAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTT
CTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATT
GCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGG
CTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAG
CTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTCCCTGC
TTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAGCTC
ACCAGGATACTACGATGGACTCTACTGGACAATGTGGAAGCTGCCCATGT
ATGGGTGCACAGATGCAACCCACGTTTTGAAGGAGGTTGGGGAGGTCCAG
AAGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGACAACAAGCG
TCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACCAGGCGTCTAGG
TTCCCAATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTATTATT
ATGTGTAACCCCCATAGTGATCATTCGATCAATGGGGGTTCGGTTTGCGT
TTAATTTGTACTTAAGCTGCTGTTGCTGCTGCTTAAATAAATAAAAANGC
AAACAAAACGCTTATTCCGTGTNCCCTACCTTTGNATCTTGCCGAGGTGC
CCTTGCCTCACGCGCTTGTTGTGCCTGCACCACAACGAGCGACTGCTTAG
GAACCTGGCCTGTCGTTCTCTCACTCCTCTCCTTGCTCTCTCCGCTCTCT
TGGAGGCTCGCTCTCTCCCCGGCTTGGCCCTG
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