EY703463

Overview
NameEY703463
Unique NameEY703463
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY703463 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 2.299e-74
Identity = 81/105 (77.14%), Postives = 92/105 (87.62%), Query Frame = 2
Query:  134 QKSTSVAGATKASFLGGKKLTLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPTEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAARIFIPE 448
            QK+ S+ GATKASFLGGK+L + K  A  G+RSV+VSA AADP+RPLWFPGSTP EWLDGSLPGDFGFDPLGLGSDPE+L+WN Q+E+VH RWAMLGAA IFIPE
Sbjct:   21 QKNGSIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPE 125          

HSP 2 Score: 126.331 bits (316), Expect = 2.299e-74
Identity = 59/101 (58.42%), Postives = 71/101 (70.30%), Query Frame = 1
Query:  454 TKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGXRWADIIKPGCVNTDPIFPT-------TSSPAPIWGTPVGFGLTHLLGIRFPRKVKXLXTRK 735
            TK+G+LNTPSWYTAGE EYFTDTTTLF++E++ IGWAEG RWADIIKPGCVNTDPIFP           P  +W  P+G+G         P K+K L T++
Sbjct:  128 TKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGS------PAKIKELRTKE 222          
BLAST of EY703463 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.085e-71
Identity = 73/106 (68.87%), Postives = 85/106 (80.19%), Query Frame = 2
Query:  134 QKSTSVAGATKASFLGGKKLTLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPTEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAARIFIPEL 451
            +++ S+ G TKASFLGG++L + K   T   RS +    AADP+RPLWFPGSTP  WLDGSLPGDFGFDPLGL SDPE+LRWN Q+E+VHCRWAMLGAA IFIPEL
Sbjct:   21 RRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEL 126          

HSP 2 Score: 127.487 bits (319), Expect = 5.085e-71
Identity = 62/101 (61.39%), Postives = 71/101 (70.30%), Query Frame = 1
Query:  454 TKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGXRWADIIKPGCVNTDPIFPT-------TSSPAPIWGTPVGFGLTHLLGIRFPRKVKXLXTRK 735
            TK+GILNTPSWYTAGE EYFTDTTTLFIVE++ IGWAEG RWADIIKPGCVNTDPIFP           P  +W  P+G+G         P K+K L T++
Sbjct:  128 TKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGS------PAKIKELRTKE 222          
BLAST of EY703463 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.696e-33
Identity = 46/108 (42.59%), Postives = 61/108 (56.48%), Query Frame = 2
Query:  134 QKSTSVAG--ATKASFLGGKKLTLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPTEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAARIFIPEL 451
            Q S ++ G    K+ FLGG    L +  A         ++   +  +  W PG     +L GSLPGD GFDPLGL  DPE LRW VQ+E+V+ RWAMLG A + +PE+
Sbjct:    7 QASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEV 114          

HSP 2 Score: 76.6406 bits (187), Expect = 1.696e-33
Identity = 36/72 (50.00%), Postives = 44/72 (61.11%), Query Frame = 1
Query:  454 TKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGXRWADIIKPGCVNTDPIFPTTSSPAPIWGTPVG 669
            T +GI+N P WY AG+ EYF  ++TLF++E I   + E  RW DI  PG VN DPIF   S PA   G P G
Sbjct:  116 TSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGG 187          
BLAST of EY703463 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.038e-32
Identity = 45/103 (43.69%), Postives = 60/103 (58.25%), Query Frame = 2
Query:  161 TKASFLGGKKLTLRKN------GATAGTRSVSVSAAAADPNRPLWFPGSTPTEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAARIFIPEL 451
            +K  FL G    L ++      G++A T S  V A   +     W PG    ++L GSL GD GFDPLGL  DPE L+W VQ+E+V+ RWAMLG A + +PE+
Sbjct:   18 SKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGE-----WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEV 115          

HSP 2 Score: 75.8702 bits (185), Expect = 4.038e-32
Identity = 35/72 (48.61%), Postives = 44/72 (61.11%), Query Frame = 1
Query:  454 TKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGXRWADIIKPGCVNTDPIFPTTSSPAPIWGTPVG 669
            TK+GI+N P WY AG+ +YF  ++TLF++E I   + E  RW DI  PG VN DPIF   S P    G P G
Sbjct:  117 TKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGG 188          
BLAST of EY703463 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.900e-23
Identity = 39/75 (52.00%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  227 RSVSVSAAAADPNRPLWFPGSTPTEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAARIFIPEL 451
            R V+V A  +      W PG     +LDGSL GD GFDPL L  DPE LRW VQ+++V+ RWAMLG A + IPE+
Sbjct:   26 RDVAVQAKGS------WLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEV 94          

HSP 2 Score: 49.6766 bits (117), Expect = 5.900e-23
Identity = 29/71 (40.85%), Postives = 36/71 (50.70%), Query Frame = 1
Query:  454 TKLGILNTPSWYTA-GELEYFTDTTTLFIVEMIFIGWAEGXRWADIIKPGCVNTDPIFPTTSSPAPIWGTP 663
            TK G++N P W    G+  YF  ++T   V M    + E  RW DI  PG VN DPIF + S P    G P
Sbjct:   96 TKAGLMNAPEWLRLPGKETYFASSSTALRVHMSST-YVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYP 165          
BLAST of EY703463 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.062e-19
Identity = 52/112 (46.43%), Postives = 61/112 (54.46%), Query Frame = 2
Query:  149 VAGATKASFLGGKKLTLR------KNGATAGT--RSVSVSAAAADPNRPLWFPGST------PTEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAARIFI 442
            V G T     GGKK +        K GA   T  R + V AAAA P +  W P           EWLDGSLPGDFGFDPLGLG DP  L+W  ++E++H RWAML    IF+
Sbjct:   11 VNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKS-WIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFV 121          

HSP 2 Score: 28.1054 bits (61), Expect = 1.062e-19
Identity = 9/24 (37.50%), Postives = 13/24 (54.17%), Query Frame = 1
Query:  526 TLFIVEMIFIGWAEGXRWADIIKP 597
            TL   +++ +GW E  RW D   P
Sbjct:  147 TLLGTQLLLMGWVESKRWVDFFDP 170          

HSP 3 Score: 23.483 bits (49), Expect = 1.062e-19
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  654 GYPSGLWFDPLA 689
            GYP G +FDPL+
Sbjct:  196 GYPGGKFFDPLS 207          
BLAST of EY703463 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.313e-19
Identity = 44/107 (41.12%), Postives = 57/107 (53.27%), Query Frame = 2
Query:  140 STSVAGATKASFLGGKKLTLRKNGATAGTRSVSVSAAAADPNRPLWFPGS------TPTEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAARIFI 442
            S+ + G  K+  L    L  R  GA    R   ++AAA    +  W P           EWLDGSLPGD+GFDPLGLG DP  L+W  ++E++H RWAM     IF+
Sbjct:   14 SSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAA----KKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV 116          

HSP 2 Score: 28.8758 bits (63), Expect = 2.313e-19
Identity = 10/24 (41.67%), Postives = 13/24 (54.17%), Query Frame = 1
Query:  526 TLFIVEMIFIGWAEGXRWADIIKP 597
            TL   ++I +GW E  RW D   P
Sbjct:  142 TLLGTQLILMGWVESKRWVDFFDP 165          

HSP 3 Score: 24.6386 bits (52), Expect = 2.313e-19
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  654 GYPSGLWFDPLA 689
            GYP G +FDPLA
Sbjct:  191 GYPGGKFFDPLA 202          
BLAST of EY703463 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.997e-19
Identity = 49/111 (44.14%), Postives = 60/111 (54.05%), Query Frame = 2
Query:  140 STSVAGATKASFLGGKKLTLRKNGATAGTRSVS----VSAAAADPNRPLWFPGS------TPTEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAARIFI 442
            +T+V     +SFL G K T    GA    R  +    V AAAA   +  W P           EWLDGSLPGDFGFDPLGLG DP  L+W  ++E++H RWAM     IF+
Sbjct:    6 ATAVLNGLSSSFLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV 116          

HSP 2 Score: 24.6386 bits (52), Expect = 2.997e-19
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  654 GYPSGLWFDPLA 689
            GYP G +FDPLA
Sbjct:  191 GYPGGKFFDPLA 202          

HSP 3 Score: 24.2534 bits (51), Expect = 2.997e-19
Identity = 7/20 (35.00%), Postives = 12/20 (60.00%), Query Frame = 1
Query:  526 TLFIVEMIFIGWAEGXRWAD 585
            +L   +++ +GW E  RW D
Sbjct:  142 SLLGTQLLLMGWVESKRWVD 161          
BLAST of EY703463 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.776e-17
Identity = 41/87 (47.13%), Postives = 49/87 (56.32%), Query Frame = 2
Query:  224 TRSVSVSAAAADP------NRPLWFPGSTPTEWLDGSLPGDFGFDPLGLGSDPETL------RWNVQSEIVHCRWAMLGAARIFIPE 448
            +R   V AAA  P      +RPLWF       +LDGSLPGD+GFDPLGL SDPE        RW    E+++ R+AMLGA     PE
Sbjct:   35 SRKGLVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPE 120          

HSP 2 Score: 39.6614 bits (91), Expect = 1.776e-17
Identity = 25/70 (35.71%), Postives = 36/70 (51.43%), Query Frame = 1
Query:  493 AGELEYFTDTTTLFIVEMIFIGWAEGXRWADIIKPGC------VNTDPIFPTTSSPAPIWG---TPVGFG 675
            AG   Y+ D  TLF++EM  +G+AE  R+ D  KPG       +  +  F  + +PA   G    P+GFG
Sbjct:  145 AGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFG 214          
BLAST of EY703463 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.904e-17
Identity = 41/110 (37.27%), Postives = 53/110 (48.18%), Query Frame = 2
Query:  140 STSVAGATKASFLGGKKLTLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPTEWLDGSLPGDFGFDPLGLGSDPETL------RWNVQSEIVHCRWAMLGAARIFIPEL 451
            S S +       +G +        A+   R+ S        NR LWF       +LDG LPGDFGFDPLGL SDPE        +W    E+++ R+AMLGAA    PE+
Sbjct:   11 SISTSAEAARQIIGSRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 119          

HSP 2 Score: 39.2762 bits (90), Expect = 3.904e-17
Identity = 25/75 (33.33%), Postives = 37/75 (49.33%), Query Frame = 1
Query:  493 AGELEYFTDTTTLFIVEMIFIGWAEGXRWADIIKPGCV--------------NTDPIFPTTSSPAPIWGTPVGFG 675
            AG   Y+ D  TLF++EM  +G+AE  R+ D  KPG +              + DP +P      P++  P+GFG
Sbjct:  143 AGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYP----GGPLF-NPLGFG 212          
The following BLAST results are available for this feature:
BLAST of EY703463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
CB12_PETHY2.299e-7477.14Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC5.085e-7168.87Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_PEA1.696e-3342.59Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH4.038e-3243.69Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB120_HORVU5.900e-2352.00Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB4_SPIOL1.062e-1946.43Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4A_SOLLC2.313e-1941.12Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC2.997e-1944.14Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB23_PEA1.776e-1747.13Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB13_SOLLC3.904e-1737.27Chlorophyll a-b binding protein 8, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-019-H05-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY703463 ID=EY703463; Name=EY703463; organism=Citrus sinensis; type=EST; length=944bp
CCACGCGTCCGGTATTCTACTTTACACGCACACAAACGCCAGTCATAATT
TTGCTGAAAGCCTTTGCCTGGTAGTAAAAATGGCTTCCGTTTGTGCTTCC
CCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAGTACATCAGT
TGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGCTGACATTGA
GAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAGTGAGTGCGGCT
GCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCACTCCTACTGA
ATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCCTCTTGGTC
TTGGATCTGATCCTGAGACGCTTAGATGGAACGTGCAATCAGAAATTGTG
CACTGCAGATGGGCAATGTTAGGAGCTGCACGAATTTTCATTCCGGAATT
GGAACAAAACTTGGAATCCTCAACACTCCATCCTGGTACACAGCTGGGGA
GCTAGAGTACTTCACAGACACCACCACCCTGTTCATTGTTGAGATGATAT
TCATAGGCTGGGCAGAGGGCANACGGTGGGCCGACATTATAAAGCCAGGC
TGTGTGAACACTGACCCGATCTTTCCCACAACAAGCTCACCGGCACCGAT
TTGGGGTACCCCAGTGGGCTTTGGTTTGACCCACTTGCTGGGGATCCGGT
TCCCCCGAAAGGTAAAGGANCTGNNGACTAGGAAATCAANAATGGAAATT
GGCTTTTTGGCCTGAATGGTGGCTGGTTCACCCATTTACACCGCCCCCGC
CCATTGACATCTATTGCTCCCTGGCTAACCTGAACTGCCCCGTTTTGCTG
CCTCCCCCCAGTGGATATTACAACAAGGGGGAAATTTTGGCCATGGACCT
GAAACAAGGAATGGGTTTTCTAGGAAAGTGGTAATTAAATTTTT
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