EY703457

Overview
NameEY703457
Unique NameEY703457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY703457 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 1.155e-70
Identity = 146/273 (53.48%), Postives = 165/273 (60.44%), Query Frame = 1
Query:   61 MASWVLSECGLKPLPHIFPRPRTG-----INPSKARFLHSKKSLTDLKLPLVKC-SGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAXGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVRMMNPLHPCLRKL-QDF**CNKILRFKFLF-LACYP-FIFE*SPG 852
            MASWVLSECGL+PLP ++P+PRTG      NP+K RF     S TDL      C S    R++NW L+VSAPLRV  +E E+                        FDPGAPPPFKL+DIR AIPKHCWVKDPW+SM Y                        PLYW A  TMFWALFVLGHDCGHGSFSND KLNSVVGH+LHSSILVPYHGWRISHRTHHQNHGHV      HP   K+ ++     K LRF   F L  YP +++  SPG
Sbjct:    1 MASWVLSECGLRPLPRVYPKPRTGHPLLNSNPTKLRF-----SRTDLGNGSSFCLSSGILREKNWALRVSAPLRVLQVEEEEENKEGERVINGGEE----------FDPGAPPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAVVFGLAAVAAYFNNWVVWPLYWFAQSTMFWALFVLGHDCGHGSFSNDPKLNSVVGHILHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYKNLDTATKKLRFTLPFPLLAYPIYLWSRSPG 258          
BLAST of EY703457 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.508e-70
Identity = 146/279 (52.33%), Postives = 167/279 (59.86%), Query Frame = 1
Query:   61 MASWVLSECGLKPLPHIFPRPRTGI---NPSKARFLHSKKSLTDLKLPLVKCSGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAXGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVRMMNPLHPCLRKL-QDF**CNKILRF--KFLFLACYPFIFE*SPGNLFS-LDPT 876
            MA+W   +CGLKPL  + PRPRTG    + S+  FL + K +   K   ++C+    R+RNWGLKVSAPLRVA +E E                         FDPGAPPPF LADIRAAIPKHCWVKDPW+SMSY                        PLYWAA GTMFWALFVLGHDCGHGSFSN+ KLNSVVGHLLHSSILVPYHGWRISHRTHHQ+HGH       HP   KL +      ++LRF   F  LA   ++F  SPG   S  DP+
Sbjct:    1 MATWYHQKCGLKPLAPVIPRPRTGAALSSTSRVEFLDTNKVVAGPKFQPLRCN---LRERNWGLKVSAPLRVASIEEEQKSVDLTNGTNGVEHEKLPE-----FDPGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDVIAVFGLAAAAAYLNNWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVGHLLHSSILVPYHGWRISHRTHHQHHGHAENDESWHPLPEKLFRSLDTVTRMLRFTAPFPLLAFPVYLFSRSPGKTGSHFDPS 271          
BLAST of EY703457 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 9.467e-65
Identity = 138/271 (50.92%), Postives = 154/271 (56.83%), Query Frame = 1
Query:   64 ASWVLSECGLKPLPHIFPRPRTGI-----NPSKARFLHSKKSLTDLKLPLVKCSGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAXGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVRMMNPLHPCLRKL-QDF**CNKILRFKFLF-LACYPF-IFE*SPG 852
            A WVLSECGL+PLP I+ RPR G      N  K R L   KS  +L       S   S+  NW L V+ P+ V+ + GED                        FD GAPPPF LADIRAAIPKHCWVK+PW+SMSY                        PLYW   GTMFWALFVLGHDCGHGSFSN+ KLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHV      HP   K+ +      K LRF   F +  YPF ++  SPG
Sbjct:    3 AGWVLSECGLRPLPRIYSRPRIGFTSKTTNLLKLRELPDSKSY-NLCSSFKVSSWSNSKQSNWALNVAVPVNVSTVSGEDDREREEFNGIVNVDEGKGEF----FDAGAPPPFTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVAAYFNNWVAWPLYWFCQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIFKSLDNVTKTLRFSLPFPMLAYPFYLWSRSPG 268          
BLAST of EY703457 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.511e-62
Identity = 142/279 (50.90%), Postives = 160/279 (57.35%), Query Frame = 1
Query:   61 MASWVLSECGLKPLPHIFPRPRTGI--NPSKARFLHSKKSLTDLKLPLVKCSGDFSRD---RNWGLKVSAPLRV-----APLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAXGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVRMMNPLHPCLRKLQDF**CNKILR-FKF---LFLACYPF-IFE*SPG 852
            MA+ VLSECG++PLP I+  PR+    N +K R   S  S      PL    G  SRD   RNW L VS PL       +PLE ++                        FDPGAPPPF LADIRAAIPKHCWVK+PWKS+SY                        PLYW A GTMFWALFVLGHDCGHGSFSND KLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHV      HP   K+ +    +K  R F+F   L +  YPF ++  SPG
Sbjct:    1 MANLVLSECGIRPLPRIYTTPRSNFLSNNNKFRPSLSSSSYKTSSSPL--SFGLNSRDGFTRNWALNVSTPLTTPIFEESPLEEDNKQR---------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGAAYLNNWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPMSEKIYNT--LDKPTRFFRFTLPLVMLAYPFYLWARSPG 254          
BLAST of EY703457 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.152e-60
Identity = 127/267 (47.57%), Postives = 145/267 (54.31%), Query Frame = 1
Query:   61 MASWVLSECGLKPLPHIFPRPRTGINPSKARFLHSKKSLTDLKLPLVKCSGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAXGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVRMMNPLHPCLRKL-QDF**CNKILRFKFLF-LACYPF-IFE*SPG 852
            MAS VLSECG +PLP  +P+  T    +          L      L    G +S+ RNW L V+ PL       E+                        FDPGAPPPF LADIRAAIPKHCWVK+PW SMSY                        PLYW A GTMFWALFVLGHDCGHGSFSND +LNSV GHLLHSSILVPYHGWRISHRTHHQNHGHV      HP    + ++     ++ RF   F +  YPF ++  SPG
Sbjct:    1 MASSVLSECGFRPLPRFYPKHTTSFASNPKPTFKFNPPLKPPSSLLNSRYGFYSKTRNWALNVATPLTTLQSPSEEDTER--------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVAAYFNNWLLWPLYWFAQGTMFWALFVLGHDCGHGSFSNDPRLNSVAGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLPESIYKNLEKTTQMFRFTLPFPMLAYPFYLWNRSPG 247          
BLAST of EY703457 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.979e-54
Identity = 115/216 (53.24%), Postives = 125/216 (57.87%), Query Frame = 1
Query:  229 RNWGLKVSAPLRV-----APLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAXGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVRMMNPLHPCLRKL-QDF**CNKILRFKF-LFLACYPF-IFE*SPG 852
            RNW L V+ PL V      P+E E                         FDPGAPPPF LADIRAAIPKHCWVK+PWKSMSY                        PLYW A GTMFWALFVLGHDCGHGSFSND +LNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHV      HP   K+ +      +  RF   L +  YPF ++  SPG
Sbjct:   17 RNWALNVTTPLTVDSSSSPPIEEEPKTQR--------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWKSMSYVVRELAIVFALAAGAAYLNNWLVWPLYWIAQGTMFWALFVLGHDCGHGSFSNDPRLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPMSEKIYKSLDKPTRFFRFTLPLVMLAYPFYLWARSPG 212          
BLAST of EY703457 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.794e-47
Identity = 95/167 (56.89%), Postives = 109/167 (65.27%), Query Frame = 1
Query:  361 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAXGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVRMMNPLHPCLRKL-QDF**CNKILRFKFLF-LACYPF-IFE*SPG 852
            FDPGAPPPFK+ADIRAAIPKHCW K   +S+SY                        PLYW A GTMFWALFVLGHDCGHGSFSN  KLNS VGH+LHS ILVPY+GWRISHRTHHQNHGHV       P   K+ ++     ++LR+ F F +  YPF ++  SPG
Sbjct:   22 FDPGAPPPFKIADIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFNSWFFWPLYWPAQGTMFWALFVLGHDCGHGSFSNSSKLNSFVGHILHSLILVPYNGWRISHRTHHQNHGHVEKDESWVPLTEKVYKNLDDMTRMLRYSFPFPIFAYPFYLWNRSPG 188          
BLAST of EY703457 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.770e-46
Identity = 92/167 (55.09%), Postives = 108/167 (64.67%), Query Frame = 1
Query:  361 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAXGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVRMMNPLHPCLRKLQD-F**CNKILRFKFLF-LACYP-FIFE*SPG 852
            FDP APPPF+LA+IR  IPKHCWVKDP +S+SY                        PLYWA  GTMFWA+FVLGHDCGHGSFS+   LN+VVGH+LHS+ILVPYHGWRISH+THHQNHG+V       P   KL +      K LR+K  F L  YP ++ + SPG
Sbjct:   22 FDPSAPPPFRLAEIRNVIPKHCWVKDPLRSLSYVVRDVIFVATLIGIAIHLDSWLFYPLYWAIQGTMFWAIFVLGHDCGHGSFSDSQLLNNVVGHILHSAILVPYHGWRISHKTHHQNHGNVETDESWVPMPEKLYNKVGYSTKFLRYKIPFPLLAYPMYLMKRSPG 188          
BLAST of EY703457 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.285e-45
Identity = 90/167 (53.89%), Postives = 109/167 (65.27%), Query Frame = 1
Query:  361 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAXGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVRMMNPLHPCLRKL-QDF**CNKILRFKFLF-LACYP-FIFE*SPG 852
            FDP APPPFK+A+IRA+IPKHCWVK+PW+S+SY                         +Y    GTMFWALFVLGHDCGHGSFS+   LNS+VGH+LHSSILVPYHGWRISHRTHHQNHGH+       P   K+ ++     +++RF   F L  YP ++F  SPG
Sbjct:   25 FDPSAPPPFKIAEIRASIPKHCWVKNPWRSLSYVLRDVLVIAALVAAAIHFDNWLLWLIYCPIQGTMFWALFVLGHDCGHGSFSDSPLLNSLVGHILHSSILVPYHGWRISHRTHHQNHGHIEKDESWVPLTEKIYKNLDSMTRLIRFTVPFPLFVYPIYLFSRSPG 191          
BLAST of EY703457 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 8.332e-45
Identity = 82/122 (67.21%), Postives = 88/122 (72.13%), Query Frame = 1
Query:  361 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAXGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHV 726
            FDP A PPFK+ DIRAAIPKHCWVK P +SMSY                        PLYWAA GT+FWA+FVLGHDCGHGSFS+   LNSVVGH+LHS ILVPYHGWRISHRTHHQNHGHV
Sbjct:   26 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALAIAAVYVDSWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHV 147          
The following BLAST results are available for this feature:
BLAST of EY703457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
FAD3C_SESIN1.155e-7053.48Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3C_SOYBN1.508e-7052.33Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3C_RICCO9.467e-6550.92Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3C_ARATH1.511e-6250.90Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3D_ARATH3.152e-6047.57Temperature-sensitive omega-3 fatty acid desaturas... [more]
FAD3C_BRANA1.979e-5453.24Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3E_PHAAU1.794e-4756.89Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_TOBAC5.770e-4655.09Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_SOYBN1.285e-4553.89Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_ARATH8.332e-4567.21Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-019-G10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY703457 ID=EY703457; Name=EY703457; organism=Citrus sinensis; type=EST; length=933bp
CAATTCTTTGACACCTATCTTCTGTCTCTCTTAACCCTTTGAGGATTTTT
CTGAGACCCAATGGCGAGTTGGGTTCTTTCAGAATGTGGCTTAAAGCCTC
TGCCTCATATTTTTCCGAGGCCAAGGACTGGAATCAATCCCTCAAAGGCC
AGGTTTTTGCACTCAAAAAAGAGTTTAACAGATCTAAAGCTCCCATTAGT
TAAATGTTCGGGTGATTTTTCTAGAGACAGGAACTGGGGTCTTAAAGTTA
GTGCTCCACTGAGGGTGGCACCACTTGAGGGGGAGGATGAAGAAGAGAGA
ATCAACGGTGTTAATGGGATTGGAAATAACAAAGGAGTCGAAGAAGAAGA
GGGATCTGAATTTGATCCTGGGGCTCCTCCTCCTTTCAAGCTAGCTGATA
TTAGAGCTGCTATTCCAAAGCATTGTTGGGTTAAGGATCCTTGGAAGTCT
ATGAGCTATGTTGTTAGAGATGTTGTGGTGGTTTTTGGCTTGGCTGCTGC
TGCTGCTTATTTGAACAATTGGGTTGTTTGGCCTTTGTACTGGGCTGCTC
ANGGAACCATGTTTTGGGCTCTTTTTGTGCTCGGTCATGATTGTGGTCAT
GGAAGCTTTTCAAATGATCACAAGTTGAATAGTGTGGTGGGGCATCTGCT
GCATTCTTCAATTCTGGTTCCTTATCATGGATGGAGAATTAGCCACAGGA
CTCATCATCAAAACCATGGGCATGTGAGAATGATGAATCCCCTGCACCCG
TGTCTGAGAAAATTACAGGACTTTTGATAGTGCAACAAGATTTTGAGATT
CAAATTCCTTTTCCTTGCTTGCTATCCCTTTATCTTTGAGTAGAGTCCGG
GGAATCTGTTCTCACTTGACCCTACATGACCTGTTGTCCAAGTGAGAGAA
GATTGATCACTCACATATGCTGACGGCATGCTG
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