FC922168

Overview
NameFC922168
Unique NameFC922168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC922168 vs. ExPASy Swiss-Prot
Match: DME_ARATH (Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2)

HSP 1 Score: 408.683 bits (1049), Expect = 2.018e-113
Identity = 201/277 (72.56%), Postives = 228/277 (82.31%), Query Frame = 2
Query:    2 ALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAE---VRREIGKCEPIIEEPATPEQECTEITESDIEDAFY-EDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFG 820
            ALP PEE+S+ S+T+P   E  P V I  + LP P + SLA      RE   CEPIIEEPA+P QECTEITESDIEDA+Y EDPDEIPTIKLNIE+F + L+ +M+  MELQE DMSKALVAL+P   SIP PKLKN+SRLRTEHQVYELPDSH LL+GMD+REPDDPSPYLLAIWTPGETANS Q PE +C  K SGK+C ++TC  CNS+RE NSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNE+FADH+SSL PIDVPR+W+W+LPRR VYFG
Sbjct: 1658 ALPAPEERSLTSATIPVPPESYPPVAIPMIELPLPLEKSLASGAPSNRE--NCEPIIEEPASPGQECTEITESDIEDAYYNEDPDEIPTIKLNIEQFGMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVYELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSECNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWDLPRRTVYFG 1932          
BLAST of FC922168 vs. ExPASy Swiss-Prot
Match: ROS1_ARATH (Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2)

HSP 1 Score: 339.732 bits (870), Expect = 1.151e-92
Identity = 164/255 (64.31%), Postives = 200/255 (78.43%), Query Frame = 2
Query:   83 NPMPLPSPEKSSL---------AEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFG 820
            NP+PL  PE             +E  +++  CEPIIEEPA+PE E  E++ +DIE+AF+EDP+EIPTI+LN++ FT NL+  M+   ELQ+ +MS ALVAL  + AS+P PKLKN+S+LRTEH+VYELPD HPLL  +++REPDDP  YLLAIWTPGETA+SIQ   S C  + +G LCDE+TCFSCNS++ET SQ VRGT+LIPCRTAMRGSFPLNGTYFQVNEVFADH SSLNPI+VPRE +W LPRR VYFG
Sbjct: 1081 NPLPLHLPEPFQREQGSEVVQHSEPAKKVTCCEPIIEEPASPEPETAEVSIADIEEAFFEDPEEIPTIRLNMDAFTSNLKKIMEHNKELQDGNMSSALVALTAETASLPMPKLKNISQLRTEHRVYELPDEHPLLAQLEKREPDDPCSYLLAIWTPGETADSIQPSVSTCIFQANGMLCDEETCFSCNSIKETRSQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHASSLNPINVPRELIWELPRRTVYFG 1335          
BLAST of FC922168 vs. ExPASy Swiss-Prot
Match: DML2_ARATH (DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.977e-68
Identity = 151/286 (52.80%), Postives = 175/286 (61.19%), Query Frame = 2
Query:    2 ALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIED--------AFYEDP----DEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGK-LCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFG 820
            ALP PEE    S  +     +   VV+N  P     +    E +R    CEPIIEEPA+PE E     E DIED           EDP    D IPTI LN E  T +      + +  +E   S  LV L+  AA+IP  KLK   +LRTEH V+ELPD H +LEG +RRE +D  PYLLAIWTPGET NSIQ P+ RC   ES   LC+E  CF CN  RE  SQTVRGT+LIPCRTAMRG FPLNGTYFQ NEVFADHDSS+NPIDVP E +W+L RR+ Y G
Sbjct:  976 ALPEPEESDRTSVMIHERRSKRKPVVVNFRPSLFLYQEKEQEAQRS-QNCEPIIEEPASPEPE---YIEHDIEDYPRDKNNVGTSEDPWENKDVIPTIILNKEAGTSH------DLVVNKEAGTSHDLVVLSTYAAAIPRRKLKIKEKLRTEHHVFELPDHHSILEGFERREAEDIVPYLLAIWTPGETVNSIQPPKQRCALFESNNTLCNENKCFQCNKTREEESQTVRGTILIPCRTAMRGGFPLNGTYFQTNEVFADHDSSINPIDVPTELIWDLKRRVAYLG 1251          
BLAST of FC922168 vs. ExPASy Swiss-Prot
Match: DML3_ARATH (DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 7.549e-52
Identity = 111/232 (47.84%), Postives = 148/232 (63.79%), Query Frame = 2
Query:  152 EPIIEEPATPEQECTEITESDIEDA----FYEDPDEIPTIKLNIEEFTVNLQSYM--QEKMELQECDMSKALVALNPDAASIPAP---KLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFG 820
            +P++E P++P  E  E T  DIED      Y+    +P I  +++    +++  +    +M   + ++SKALV   P+ A IP     K+K  +RLRTEH VY LPD+H LL   +RR+ DDPSPYLLAIW PGET++S   P+ +C S +  KLC  K C  C ++RE NS   RGT+LIPCRTAMRG+FPLNGTYFQ NEVFADH++SLNPI   RE    L +R +Y G
Sbjct:  756 KPLVEFPSSPRAEIPEST--DIEDVPFMNLYQSYASVPKIDFDLDALKKSVEDALVISGRMSSSDEEISKALVIPTPENACIPIKPPRKMKYYNRLRTEHVVYVLPDNHELLHDFERRKLDDPSPYLLAIWQPGETSSSFVPPKKKC-SSDGSKLCKIKNCSYCWTIREQNSNIFRGTILIPCRTAMRGAFPLNGTYFQTNEVFADHETSLNPIVFRRELCKGLEKRALYCG 984          
The following BLAST results are available for this feature:
BLAST of FC922168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DME_ARATH2.018e-11372.56Transcriptional activator DEMETER OS=Arabidopsis t... [more]
ROS1_ARATH1.151e-9264.31Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 ... [more]
DML2_ARATH1.977e-6852.80DEMETER-like protein 2 OS=Arabidopsis thaliana GN=... [more]
DML3_ARATH7.549e-5247.84DEMETER-like protein 3 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM3CD08RM1 SLH Citrus sinensis cDNA clone KN0AAM3CD08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922168 ID=FC922168; Name=FC922168; organism=Citrus sinensis; type=EST; length=821bp
TGCACTGCCAGGACCAGAGGAGAAGAGTATAGTGAGTTCAACCATGCCTA
CTATGGCTGAAAGAAACCCTTCTGTAGTTATCAATCCTATGCCATTACCT
TCACCTGAGAAAAGCTCACTCGCTGAAGTACGACGTGAAATTGGCAAGTG
TGAACCCATCATTGAAGAACCAGCAACACCAGAACAAGAATGCACAGAAA
TAACAGAAAGTGACATTGAGGATGCATTTTATGAGGATCCTGATGAAATC
CCCACAATAAAACTCAATATTGAAGAATTCACAGTGAATCTACAGAGCTA
CATGCAAGAGAAAATGGAACTACAAGAATGTGACATGTCCAAGGCTCTAG
TTGCTTTGAATCCAGATGCTGCTTCTATTCCAGCACCCAAACTGAAGAAC
GTGAGTCGGCTACGTACAGAGCACCAAGTGTATGAACTTCCAGATTCACA
TCCTCTACTAGAAGGGATGGATAGACGGGAACCTGATGATCCTAGTCCAT
ACCTCCTTGCTATATGGACCCCAGGGGAAACTGCCAATTCCATTCAACTT
CCTGAAAGTAGATGCAGGTCCAAAGAATCTGGTAAATTGTGCGATGAGAA
GACTTGTTTTTCATGCAATAGCATGAGAGAAACTAATTCACAGACTGTCA
GAGGAACTCTTCTGATTCCTTGCAGAACAGCAATGAGAGGAAGCTTTCCA
CTCAATGGCACGTACTTTCAAGTTAATGAGGTGTTTGCAGATCATGACTC
AAGCCTCAACCCCATAGATGTTCCAAGAGAATGGCTATGGAATCTGCCTA
GACGTATGGTTTACTTTGGAA
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