EY673014

Overview
NameEY673014
Unique NameEY673014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY673014 vs. ExPASy Swiss-Prot
Match: R13L1_ARATH (Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.243e-13
Identity = 72/222 (32.43%), Postives = 104/222 (46.85%), Query Frame = 3
Query:    3 MHDIVHHFAEYLCXNECLIPLFHSGEELAMSSFAEKKILHLMLAIGCGPMPI--YDNVEALRGLRSLLLESTKRS----SVILPQLFDKLTCLRALKLEVHN-ERSPEDFIKEVPTNIENLLHLKYLSLANQREIETLPETLCELYNLERLDVSCCVKLRELPQGIGRLRKLMYLDNDRTESLRYLPVGIGELIRLRRVTKFVVGGGYG-RACSLGSLKKLN 644
            MHD ++  A++          F  G +L +S     + L  +      PM       V+ LR    L L ++ RS     ++  +L   LT LR L L  +   R P DF K       N+ H ++L L+ + E+E LP++LC +YNL+ L +S C  L+ELP  I  L  L YLD   T+ LR +P   G L  L+ +T F V    G R   LG L  L+
Sbjct:  492 MHDFINELAQFASGE--FSSKFEDGCKLQVSE--RTRYLSYLRDNYAEPMEFEALREVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSLSHYKIARLPPDFFK-------NISHARFLDLS-RTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGTK-LRQMPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLH 700          
BLAST of EY673014 vs. ExPASy Swiss-Prot
Match: RGA1_SOLBU (Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.374e-12
Identity = 52/138 (37.68%), Postives = 71/138 (51.45%), Query Frame = 3
Query:  234 PQLFDKLTCLRALKLEVHNERSPEDFIKEVPTNIENLLHLKYLSLANQREIETLPETLCELYNLERLDVSCCVKLRELPQGIGRLRKLMYLDNDRTESLRYLPVGIGELIRLRRVTKFVVGGGYGRACSLGSLKKLNL 647
            P L  K   LR L L   N       + ++P++I +L+HL+YL L+    I  LP+ LC+L NL+ LD+  C  L  LP+   +L  L  L  D   SL   P  IG L  L+ ++ FV+G   G    LG LK LNL
Sbjct:  518 PSLLQKFVSLRVLNLRNSN-------LNQLPSSIGDLVHLRYLDLSGNFRIRNLPKRLCKLQNLQTLDLHYCDSLSCLPKQTSKLGSLRNLLLDGC-SLTSTPPRIGLLTCLKSLSCFVIGKRKGH--QLGELKNLNL 645          
BLAST of EY673014 vs. ExPASy Swiss-Prot
Match: RGA2_SOLBU (Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.818e-12
Identity = 53/145 (36.55%), Postives = 78/145 (53.79%), Query Frame = 3
Query:  231 LPQLFDKLTCLRALKLEVHNERSPEDFIKEVPTNIENLLHLKYLSLANQREIETLPETLCELYNLERLDVSCCVKLRELPQGIGRLRKLMYLDNDRTESLRYLPVGIGELIRLRRVTKFVVGGGYGRACSLGSLKKLNLLPDCRI 665
            LP L +K   LR L L        +    ++P++I +L+HL+YL+L     + +LP+ LC+L NL+ LD+  C KL  LP+   +L  L  L  D ++SL  +P  IG L  L+ + +FVVG   G    LG L  LNL    +I
Sbjct:  519 LPPL-EKFISLRVLNLG-------DSTFNKLPSSIGDLVHLRYLNLYGSG-MRSLPKQLCKLQNLQTLDLQYCTKLCCLPKETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCLKTLGQFVVGRKKG--YQLGELGNLNLYGSIKI 652          
BLAST of EY673014 vs. ExPASy Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.519e-11
Identity = 52/138 (37.68%), Postives = 70/138 (50.72%), Query Frame = 3
Query:  234 PQLFDKLTCLRALKLEVHNERSPEDFIKEVPTNIENLLHLKYLSLANQREIETLPETLCELYNLERLDVSCCVKLRELPQGIGRLRKLMYLDNDRTESLRYLPVGIGELIRLRRVTKFVVGGGYGRACSLGSLKKLNL 647
            P L  K   LR L L           ++++P++I +LLHL+YL L+      +LPE LC+L NL+ LDV  C  L  LP+   +L  L +L  D    L   P  IG L  L+ +  F+VG   G    LG LK LNL
Sbjct:  520 PSLLKKFVSLRVLNLSYSK-------LEQLPSSIGDLLHLRYLDLSCNN-FRSLPERLCKLQNLQTLDVHNCYSLNCLPKQTSKLSSLRHLVVDGC-PLTSTPPRIGLLTCLKTLGFFIVGSKKG--YQLGELKNLNL 646          
The following BLAST results are available for this feature:
BLAST of EY673014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
R13L1_ARATH1.243e-1332.43Putative disease resistance RPP13-like protein 1 O... [more]
RGA1_SOLBU1.374e-1237.68Putative disease resistance protein RGA1 OS=Solanu... [more]
RGA2_SOLBU6.818e-1236.55Disease resistance protein RGA2 OS=Solanum bulboca... [more]
RGA4_SOLBU1.519e-1137.68Putative disease resistance protein RGA4 OS=Solanu... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-089-B03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY673014 ID=EY673014; Name=EY673014; organism=Citrus sinensis; type=EST; length=907bp
AAATGCATGACATAGTGCACCATTTTGCCGAATACTTATGTAGNAATGAA
TGTTTAATACCACTTTTCCATAGTGGTGAAGAGTTAGCTATGAGTTCTTT
TGCGGAGAAAAAAATCCTTCATTTGATGTTAGCTATAGGCTGCGGTCCGA
TGCCCATTTACGACAATGTTGAAGCATTGCGAGGATTGCGTAGCCTCTTA
CTTGAAAGTACTAAACGTTCTAGCGTAATCCTACCTCAATTATTTGATAA
ATTAACTTGTTTGAGGGCATTAAAATTAGAGGTGCATAATGAGAGGTCGC
CTGAGGATTTCATCAAAGAAGTTCCAACAAATATAGAAAACTTATTACAT
TTGAAATACCTTAGTTTGGCCAATCAAAGGGAGATAGAAACATTACCCGA
GACGTTGTGTGAGTTGTATAATTTAGAACGTTTAGATGTTAGTTGTTGTG
TAAAACTTAGAGAATTACCTCAAGGGATTGGGAGGTTAAGAAAGCTGATG
TATTTAGACAATGACCGGACTGAATCTTTAAGGTACTTGCCGGTAGGGAT
TGGGGAATTAATCAGGCTTCGGAGAGTGACAAAGTTTGTTGTGGGTGGAG
GATATGGCAGAGCATGTAGCCTTGGGTCTCTTAAAAAGCTTAACCTCCTT
CCAGACTGCAGGATACGTGGGGCTGGGTTATGGGTCCCATGCGGGGGGGA
GGGTTAGAAGGGCTGAACTTGAAAAAAAAGAAAAATCCTTTTCATTTTGG
GATTTACTCTTTTGGTTCTTTTTAAAAGATGGGAATCGAAAAATACACTT
GGCAGGACGGGAAACTCCGGATGAGACACAATGGCCCAGGTTCCTTAGAG
CCCTCTGGACCCCCCCTCTTAAACCCAACGAAATTCGCGAGACGCCACGA
GACTATC
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