EY673008

Overview
NameEY673008
Unique NameEY673008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1880 contig Csv1_Contig1880:841..1745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY673008 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.184e-64
Identity = 124/182 (68.13%), Postives = 146/182 (80.22%), Query Frame = 3
Query:    3 DALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 548
            DALLA+AFEHIA  TKGVS  RIVR + ELAK IG++GLVAGQV+D+ SEG  D+G+EHLEFIH HKT                  D ++ KLR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDLVADK+TYPKLLGI++S++ A+KLN++AQ+QL+EFD EKA PLIALANYIAYR N
Sbjct:  176 DALLAFAFEHIATATKGVSSERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIDKSREFAEKLNREAQEQLAEFDPEKAAPLIALANYIAYRDN 357          
BLAST of EY673008 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 5.877e-64
Identity = 128/182 (70.33%), Postives = 147/182 (80.77%), Query Frame = 3
Query:    3 DALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 548
            DALLA+AFEHIAV T  VS ARIVRA+ ELAK IGA+GLVAGQV+DINSEG  ++ +E LEFIH HKT                 TD EVEKLR +AR IGLLFQVVDDILD+TKSS+ELGKTAGKDLVADK+TYPKLLGIE+S++ A+KLNK+AQ+QL+ FD EKA PLIALANYIA+RQN
Sbjct:  189 DALLAFAFEHIAVSTLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIALANYIAHRQN 370          
BLAST of EY673008 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 1.355e-60
Identity = 118/186 (63.44%), Postives = 146/186 (78.49%), Query Frame = 3
Query:    3 DALLAYAFEHIAVCTKG--VSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQ--KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 548
            DALL++AFEH+A  T    VSP R+VRA+ ELAK IG +GLVAGQV+DI+SEG    D+G+EHLEFIH HKT                 +D+E+E+LR FARCIGLLFQVVDDILD+TKSSKELGKTAGKDL+ADKLTYPK++G+E+S++ A+KLN++A+ QL  FD +K  PL+ALANYIAYRQN
Sbjct:  186 DALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYIAYRQN 371          
BLAST of EY673008 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 2.163e-58
Identity = 116/185 (62.70%), Postives = 144/185 (77.84%), Query Frame = 3
Query:    3 DALLAYAFEHIAVCTKG-VSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQ--KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 548
            DALL++AFEH+A  T   VSPAR+VRA+ ELAK IG +GLVAGQV+DI+SEG    ++G+EHL+FIH HKT                 +D E+E+LR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDL+ADKLTYPKL+G+E+S++ A+KLN +A+ QL  FD +K  PL+ALANYIA RQN
Sbjct:  182 DALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 366          
BLAST of EY673008 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 3.123e-57
Identity = 116/182 (63.74%), Postives = 136/182 (74.73%), Query Frame = 3
Query:    3 DALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 548
            D+LLA+AFEHI   T GV+P+RIV A+AELAK IG +GLVAGQV DI   G   + +E LEFIH HKT                 T+ EVEKLR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDLV DK TYPKLLG+E++K+ A +LN++A+QQL  FD  KA PLIALA+YIAYR N
Sbjct:  188 DSLLAFAFEHIVNSTAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVVDKTTYPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALADYIAYRDN 369          
BLAST of EY673008 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.358e-52
Identity = 107/185 (57.84%), Postives = 138/185 (74.59%), Query Frame = 3
Query:    3 DALLAYAFEHIAVCTKG-VSPARIVRAIAELAKYIGADGLVAGQVIDINSE--GQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 548
            DALLA AFEH+ V + G V+P R++RA+ ELA+ IG  GLVAGQ+ID+ SE      +G+EHLEFIH HKT                 T+ E+EKLR +ARCIGLLFQVVDDILD+TKS++ELGKTAGKD++A KLTYP+L+G+E SK++A+KL ++A++QL  FD  KA PL+ALA+YIA R N
Sbjct:  176 DALLALAFEHMTVVSSGLVAPERMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLERSKEVAEKLRREAEEQLLGFDPSKAAPLVALASYIACRHN 360          
BLAST of EY673008 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 9.108e-49
Identity = 104/183 (56.83%), Postives = 129/183 (70.49%), Query Frame = 3
Query:    6 ALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEG--QKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 548
            ALLA AFEH+      VS  ++VRA+ ELAK IG  GLVAGQ  D++SEG  Q D+G+E LE+IH HKT                 T+ E+EK+R FARCIGLLFQVVDDILD TKSS+ELGKTAGKD VA KLTYPK++G+E+SK+  +KL +DA++ L  FD +K  PLIAL N+IA R +
Sbjct:  192 ALLALAFEHLTEAD--VSSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKVAGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIALTNFIANRNH 372          
BLAST of EY673008 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 1.113e-46
Identity = 101/181 (55.80%), Postives = 125/181 (69.06%), Query Frame = 3
Query:    6 ALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQ--KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYR 542
            ALL+ AFEH+   T  +S  R+V A+ ELA+ IG  GLVAGQ +DI+SEG    ++G+EHLEFIH HKT                 +D E+E +R FARCIGLLFQVVDDILD TKSS+ELGKTAGKD +A KLTYPKL+G+E+SK+   +L KDA+Q L  F  EK  PL+AL  +IA R
Sbjct:  196 ALLSLAFEHMT--TAEISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAGKDQLAGKLTYPKLIGLEKSKEFVKRLTKDARQHLQGFSSEKVAPLVALTTFIANR 374          
BLAST of EY673008 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 6.990e-41
Identity = 80/176 (45.45%), Postives = 122/176 (69.32%), Query Frame = 3
Query:   33 IAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQ----KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 548
            +A  + GV+  R++RA+ E+A+ +G +GLVAGQ  D+  E      +D  + +LE +H HKT                 +D E+E+L+++ARC+GL+FQV+DD+LD TKSS+ELGKTAGKDL+  KLTYPK++G++ +++ A +LN++AQ+ L  FD +K VPL++LA+YI  RQN
Sbjct:  161 LASTSLGVTSERVLRAVQEMARAVGTEGLVAGQAADLAGERMSFKNEDDELRYLELMHVHKTAVLVEAAAVVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLDETKSSEELGKTAGKDLITGKLTYPKVMGVDNAREYAKRLNREAQEHLQGFDSDKVVPLLSLADYIVKRQN 336          
BLAST of EY673008 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.508e-35
Identity = 79/182 (43.41%), Postives = 114/182 (62.64%), Query Frame = 3
Query:    3 DALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 548
            DALLAYAFE IA  TK V    IV+ IA++A  +   GLV GQ+ID++SEG+ D  +E L FIH HKT                  + ++ +   +A+ IGL FQ++DD+LD+  + ++LGK+ GKDL   K TYP   G+EES K A+ L ++A++++  FD  KA+PLIA+A++I  R N
Sbjct:  120 DALLAYAFEFIATQTKNVPADLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFWGVEESIKQAELLVEEAKEEILYFD-NKAIPLIAIADFIVNRNN 300          
The following BLAST results are available for this feature:
BLAST of EY673008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
GGPPS_CATRO1.184e-6468.13Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_HEVBR5.877e-6470.33Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH1.355e-6063.44Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_SINAL2.163e-5862.70Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CAPAN3.123e-5763.74Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP3_ARATH1.358e-5257.84Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
GGPP4_ARATH9.108e-4956.83Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]
GGPP2_ARATH1.113e-4655.80Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
GGPP6_ARATH6.990e-4145.45Geranylgeranyl pyrophosphate synthetase 6, mitocho... [more]
CRTE_CYAPA1.508e-3543.41Geranylgeranyl pyrophosphate synthetase homolog OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-089-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY673008 ID=EY673008; Name=EY673008; organism=Citrus sinensis; type=EST; length=906bp
GCGATGCGCTTTTGGCCTATGCTTTTGAACATATCGCTGTTTGTACAAAA
GGGGTTTCGCCTGCAAGAATTGTCAGAGCTATTGCGGAATTGGCTAAATA
TATCGGAGCTGATGGACTTGTCGCCGGCCAAGTTATTGATATCAATTCTG
AAGGCCAAAAAGATTTGGGAATTGAGCATCTTGAATTTATACATGAACAC
AAAACTGCAGCTTTATTGGAGGCTGCTGTTGTTCTTGGAGCCATATTGGG
CGGCGGAACTGACAACGAAGTCGAGAAACTGAGAACTTTTGCTCGCTGTA
TTGGGCTTTTGTTTCAAGTAGTTGATGATATCCTCGATCTGACCAAGTCG
TCAAAAGAATTGGGGAAGACTGCTGGCAAAGATTTGGTGGCCGATAAGTT
AACTTATCCCAAGTTGCTGGGGATCGAAGAATCGAAGAAGTTAGCTGATA
AGTTGAATAAAGATGCTCAACAGCAATTGTCGGAATTTGATCAGGAAAAG
GCCGTGCCTTTGATTGCTTTGGCTAACTATATTGCTTATAGGCAGAATTG
ATGTTTTTAATTGGGTTAATGCCTCCAGGGGAATTGTGTGGCCGTTTGAT
TTGTAATTGTATATTTAAGCTTACCTAATCTTGAAAGATCAACTGGGGGG
GCTTTTTTAATATTTTTATAAACATTCCTTCTTATTCCCCGATGGATATC
CAATTGGGTTTTGGTTAATTTTACTGGCCCCCCTGAATCCTTTAATTATT
TTTTCTTTTTGAATGGGACTCTTAAAATAAAAAAAAAAAAAAAAAAAAAG
GGCGGGCCGGCACTAAAAGATTCAGATCTACCAACCCCGCGAACGCAAAC
CTCTCATCCTCTTCAACGTGGCCCCCCGCCAATGATTCAAATGGCCCCGC
AGTTTC
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